HL_8VVU_101

3D structure

PDB id

8VVU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Anisomycin-bound mammalian ribosome with partially accommodated A-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGACCCG

Length

7 nucleotides

Bulged bases

8VVU|1|ZA|A|500, 8VVU|1|ZA|C|502, 8VVU|1|ZA|C|503

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVU_101 not in the Motif Atlas

Geometric match to HL_8CRE_202

Geometric discrepancy: 0.2806

The information below is about HL_8CRE_202

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89167.1

Basepair signature

cWW-F-F

Number of instances in this motif group

20

Unit IDs

8VVU|1|ZA|C|498
8VVU|1|ZA|G|499
8VVU|1|ZA|A|500
8VVU|1|ZA|C|501
8VVU|1|ZA|C|502
8VVU|1|ZA|C|503
8VVU|1|ZA|G|504

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain EB

S4

Chain YB

S24