HL_8VVU_105

3D structure

PDB id

8VVU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Anisomycin-bound mammalian ribosome with partially accommodated A-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UGUUCAAAG

Length

9 nucleotides

Bulged bases

8VVU|1|ZA|G|821

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVU_105 not in the Motif Atlas

Geometric match to HL_8CRE_207

Geometric discrepancy: 0.2041

The information below is about HL_8CRE_207

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11974.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

17

Unit IDs

8VVU|1|ZA|U|820
8VVU|1|ZA|G|821
8VVU|1|ZA|U|822
8VVU|1|ZA|U|823
8VVU|1|ZA|C|824
8VVU|1|ZA|A|825
8VVU|1|ZA|A|826
8VVU|1|ZA|A|827
8VVU|1|ZA|G|828

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain EB

S4

Chain JB

S9

Chain YB

S24