HL_8VVU_108

3D structure

PDB id

8VVU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Anisomycin-bound mammalian ribosome with partially accommodated A-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVU_108 not in the Motif Atlas

Geometric match to HL_8CRE_211

Geometric discrepancy: 0.0998

The information below is about HL_8CRE_211

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

8VVU|1|ZA|C|994
8VVU|1|ZA|G|995
8VVU|1|ZA|A|996
8VVU|1|ZA|A|997
8VVU|1|ZA|A|998
8VVU|1|ZA|G|999

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain AC

S26

Chain NB

uS15