HL_8VVU_115

3D structure

PDB id

8VVU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Anisomycin-bound mammalian ribosome with partially accommodated A-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AGCGAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVU_115 not in the Motif Atlas

Geometric match to HL_8P9A_217

Geometric discrepancy: 0.1078

The information below is about HL_8P9A_217

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

8VVU|1|ZA|A|1353
8VVU|1|ZA|G|1354
8VVU|1|ZA|C|1355
8VVU|1|ZA|G|1356
8VVU|1|ZA|A|1357
8VVU|1|ZA|U|1358

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain AB

RPSA

Chain CB

S2-like