HL_8VVV_004
3D structure
- PDB id
- 8VVV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian ribosomes bound to Anisomycin in the nonrotated conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGCGGCG
- Length
- 7 nucleotides
- Bulged bases
- 8VVV|1|5|G|134, 8VVV|1|5|G|135, 8VVV|1|5|C|136
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8VVV_004 not in the Motif Atlas
- Geometric match to HL_8CRE_220
- Geometric discrepancy: 0.2357
- The information below is about HL_8CRE_220
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_89167.2
- Basepair signature
- cWW-F-F
- Number of instances in this motif group
- 22
Unit IDs
8VVV|1|5|C|131
8VVV|1|5|G|132
8VVV|1|5|C|133
8VVV|1|5|G|134
8VVV|1|5|G|135
8VVV|1|5|C|136
8VVV|1|5|G|137
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain N
- eL15
- Chain h
- uL29
- Chain j
- eL37
Coloring options: