8VVV Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_8VVV_001 | 1/5/37:44 | No text annotation | geometric HL_8CRE_001 NA | |
| HL_8VVV_002 | 1/5/68:73 | No text annotation | geometric HL_8P9A_114 HL_51020.2 | |
| HL_8VVV_003 | 1/5/89:95 | No text annotation | geometric HL_9DFE_007 HL_76371.2 | |
| HL_8VVV_004 | 1/5/131:137 | No text annotation | geometric HL_8CRE_220 HL_89167.2 | |
| HL_8VVV_005 | 1/5/204:211 | T-loop with 2 bulged bases not stacked | geometric HL_3VJR_001 HL_13999.3 | |
| HL_8VVV_006 | 1/5/222:226 | No text annotation | geometric HL_5J7L_143 NA | |
| HL_8VVV_007 | 1/5/230:238 | T-loop with unstacked turn | geometric HL_8CRE_007 NA | |
| HL_8VVV_008 | 1/5/289:298 | T-loop related | geometric HL_8CRE_219 HL_63894.2 | |
| HL_8VVV_009 | 1/5/314:323 | No text annotation | geometric HL_8CRE_009 NA | |
| HL_8VVV_010 | 1/5/368:373 | GNRA | geometric HL_8CRE_029 NA | |
| HL_8VVV_011 | 1/5/393:398 | GNRA | geometric HL_6UFH_002 HL_34789.4 | |
| HL_8VVV_013 | 1/5/1323:1332 | T-loop with 2 stacked bulged bases | geometric HL_8CRE_013 NA | |
| HL_8VVV_014 | 1/5/1370:1379 | No text annotation | ||
| HL_8VVV_015 | 1/5/1395:1400 | GNRA | geometric HL_8CRE_015 NA | |
| HL_8VVV_016 | 1/5/1442:1454 | No text annotation | ||
| HL_8VVV_017 | 1/5/1485:1492 | UNCG variation | geometric HL_6VMY_004 HL_51020.2 | |
| HL_8VVV_018 | 1/5/1567:1572 | GNRA | geometric HL_8CRE_018 NA | |
| HL_8VVV_019 | 1/5/1599:1608 | No text annotation | geometric HL_8CRE_019 NA | |
| HL_8VVV_020 | 1/5/1633:1641 | No text annotation | geometric HL_8CRE_020 NA | |
| HL_8VVV_021 | 1/5/1681:1686 | No text annotation | ||
| HL_8VVV_023 | 1/5/1822:1829 | No text annotation | ||
| HL_8VVV_024 | 1/5/1870:1876 | GNRA | geometric HL_4V9F_028 HL_34789.4 | |
| HL_8VVV_025 | 1/5/1892:1899 | No text annotation | geometric HL_8P9A_138 HL_47171.1 | |
| HL_8VVV_026 | 1/5/1984:1994 | No text annotation | ||
| HL_8VVV_028 | 1/5/2093:2276 | No text annotation | ||
| HL_8VVV_029 | 1/5/2323:2328 | GNRA | geometric HL_8CRE_029 NA | |
| HL_8VVV_030 | 1/5/2382:2390 | T-loop with 2 stacked bulged bases | geometric HL_8CRE_030 NA | |
| HL_8VVV_031 | 1/5/2426:2432 | Pseudoknot geometry with 3' bulge | geometric HL_9DFE_036 HL_49081.1 | |
| HL_8VVV_032 | 1/5/2464:2469 | GNRA variation | geometric HL_8CRE_032 NA | |
| HL_8VVV_034 | 1/5/2529:2538 | No text annotation | geometric HL_4V9F_037 HL_77449.1 | |
| HL_8VVV_036 | 1/5/2584:2589 | GNRA | geometric HL_8CRE_035 NA | |
| HL_8VVV_037 | 1/5/2630:2638 | Pseudoknot geometry | geometric HL_8P9A_148 HL_22758.1 | |
| HL_8VVV_038 | 1/5/2670:2676 | T-loop related | geometric HL_8P9A_218 HL_63894.2 | |
| HL_8VVV_040 | 1/5/2744:2748 | No text annotation | geometric HL_6LTU_001 HL_90436.3 | |
| HL_8VVV_041 | 1/5/2798:2805 | No text annotation | geometric HL_8P9A_152 HL_28592.2 | |
| HL_8VVV_042 | 1/5/2816:2822 | GNRA | geometric HL_8P9A_153 HL_34789.4 | |
| HL_8VVV_043 | 1/5/2878:2883 | UNCG | geometric HL_8CRE_042 NA | |
| HL_8VVV_044 | 1/5/2907:3604 | No text annotation | ||
| HL_8VVV_045 | 1/5/3620:3624 | No text annotation | ||
| HL_8VVV_046 | 1/5/3645:3655 | No text annotation | geometric HL_4WF9_043 HL_87681.1 | |
| HL_8VVV_047 | 1/5/3674:3680 | GNRA | geometric HL_6UFG_005 HL_34789.4 | |
| HL_8VVV_048 | 1/5/3730:3735 | GNRA | geometric HL_8P9A_159 HL_34789.4 | |
| HL_8VVV_049 | 1/5/3763:3773 | No text annotation | geometric HL_8CRE_047 NA | |
| HL_8VVV_050 | 1/5/3802:3810 | No text annotation | geometric HL_8CRE_048 NA | |
| HL_8VVV_051 | 1/5/3879:3888 | No text annotation | geometric HL_8CRE_049 NA | |
| HL_8VVV_052 | 1/5/4199:4207 | No text annotation | geometric HL_8CRE_053 NA | |
| HL_8VVV_053 | 1/5/4216:4228 | No text annotation | geometric HL_4WF9_050 HL_02042.1 | |
| HL_8VVV_054 | 1/5/4256:4264 | No text annotation | geometric HL_8CRE_055 NA | |
| HL_8VVV_055 | 1/5/4276:4283 | Pseudoknot geometry | geometric HL_7A0S_055 HL_52651.2 | |
| HL_8VVV_056 | 1/5/4307:4315 | No text annotation | geometric HL_8P9A_169 HL_15296.1 | |
| HL_8VVV_057 | 1/5/4327:4332 | GNRA | geometric HL_8CRE_058 NA | |
| HL_8VVV_058 | 1/5/4358:4368 | No text annotation | geometric HL_7JRT_001 HL_36265.1 | |
| HL_8VVV_059 | 1/5/4423:4431 | No text annotation | geometric HL_8P9A_172 HL_52011.1 | |
| HL_8VVV_060 | 1/5/4480:4487 | GNRA variation | geometric HL_8CRE_061 NA | |
| HL_8VVV_061 | 1/5/4503:4509 | No text annotation | geometric HL_8CRE_062 NA | |
| HL_8VVV_062 | 1/5/4546:4551 | GNRA | geometric HL_8CRE_010 NA | |
| HL_8VVV_063 | 1/5/4609:4614 | GNRA | geometric HL_3E5C_001 HL_34789.4 | |
| HL_8VVV_064 | 1/5/4652:4657 | Ribsomal LSU H95 | geometric HL_5J7L_198 NA | |
| HL_8VVV_065 | 1/5/4694:4708 | No text annotation | geometric HL_8CRE_066 NA | |
| HL_8VVV_066 | 1/5/4912:4921 | No text annotation | ||
| HL_8VVV_067 | 1/5/4981:4989 | No text annotation | geometric HL_5J7L_201 NA | |
| HL_8VVV_069 | 1/7/32:45 | No text annotation | geometric HL_8OI5_068 HL_01182.1 | |
| HL_8VVV_070 | 1/7/36:41 | No text annotation | geometric HL_8OI5_069 HL_59381.2 | |
| HL_8VVV_071 | 1/7/86:91 | GNRA | geometric HL_7U4A_003 HL_34789.4 | |
| HL_8VVV_072 | 1/8/47:56 | Pseudoknot with intercalation | geometric HL_7A0S_001 HL_17803.1 | |
| HL_8VVV_073 | 1/8/107:112 | No text annotation | geometric HL_7VTI_001 HL_89167.2 | |
| HL_8VVV_075 | 1/9/7:17 | No text annotation | geometric HL_8CRE_191 HL_73535.1 | |
| HL_8VVV_076 | 1/9/69:80 | No text annotation | ||
| HL_8VVV_077 | 1/9/156:162 | GNRA related | geometric HL_8CRE_193 HL_34789.4 | |
| HL_8VVV_079 | 1/9/288:295 | T-loop with 1 bulged base | geometric HL_8CRE_196 HL_67772.1 | |
| HL_8VVV_080 | 1/9/377:387 | No text annotation | ||
| HL_8VVV_081 | 1/9/416:421 | GNRA variation | geometric HL_8CRE_199 HL_34789.4 | |
| HL_8VVV_082 | 1/9/441:452 | No text annotation | geometric HL_8CRE_200 HL_86432.1 | |
| HL_8VVV_084 | 1/9/498:504 | No text annotation | geometric HL_8P9A_201 HL_89167.2 | |
| HL_8VVV_086 | 1/9/569:581 | No text annotation | geometric HL_8P9A_203 HL_68749.1 | |
| HL_8VVV_087 | 1/9/618:623 | No text annotation | geometric HL_8CRE_205 HL_93535.2 | |
| HL_8VVV_088 | 1/9/820:828 | No text annotation | geometric HL_8CRE_207 HL_11974.2 | |
| HL_8VVV_091 | 1/9/957:966 | No text annotation | geometric HL_8P9A_209 HL_38491.2 | |
| HL_8VVV_092 | 1/9/994:999 | GNRA | geometric HL_8CRE_211 HL_34789.4 | |
| HL_8VVV_093 | 1/9/1054:1064 | No text annotation | geometric HL_5J7L_017 NA | |
| HL_8VVV_095 | 1/9/1141:1146 | GNRA | geometric HL_8P9A_159 HL_34789.4 | |
| HL_8VVV_096 | 1/9/1178:1183 | GNRA | geometric HL_8CRE_215 HL_34789.4 | |
| HL_8VVV_097 | 1/9/1245:1254 | No text annotation | geometric HL_8P9A_215 HL_97521.1 | |
| HL_8VVV_099 | 1/9/1353:1358 | GNRA | geometric HL_4V9F_015 HL_34789.4 | |
| HL_8VVV_100 | 1/9/1366:1373 | T-loop related | geometric HL_8CRE_219 HL_63894.2 | |
| HL_8VVV_105 | 1/9/1658:1666 | T-loop with 1 bulged base | geometric HL_8CRE_224 HL_61418.2 | |
| HL_8VVV_107 | 1/9/1847:1852 | GNRA | geometric HL_5J7L_031 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_8VVV_012 | No text annotation | ||
| HL_8VVV_022 | GNRA | ||
| HL_8VVV_027 | GNRA wlth tandem sheared | ||
| HL_8VVV_033 | No text annotation | ||
| HL_8VVV_035 | GNRA | ||
| HL_8VVV_039 | No text annotation | ||
| HL_8VVV_068 | No text annotation | ||
| HL_8VVV_074 | No text annotation | ||
| HL_8VVV_078 | GNRA | ||
| HL_8VVV_083 | UNCG | ||
| HL_8VVV_085 | GNRA | ||
| HL_8VVV_089 | No text annotation | ||
| HL_8VVV_090 | No text annotation | ||
| HL_8VVV_094 | No text annotation | ||
| HL_8VVV_098 | No text annotation | ||
| HL_8VVV_101 | No text annotation | ||
| HL_8VVV_102 | No text annotation | ||
| HL_8VVV_103 | GNRA | ||
| HL_8VVV_104 | No text annotation | ||
| HL_8VVV_106 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_8VVV_001 | 1/5/6:7, 1/8/149:151 | Single bulged C | geometric IL_1DQF_001 NA | |
| IL_8VVV_002 | 1/5/12:14, 1/8/143:144 | Single bulged U | geometric IL_8P9A_232 IL_97561.3 | |
| IL_8VVV_003 | 1/5/16:18, 1/8/139:141 | Isolated non-canonical cWW pair | geometric IL_1Z7F_006 IL_01003.3 | |
| IL_8VVV_004 | 1/5/26:27, 1/5/55:57 | Single stack bend | geometric IL_8CRE_004 NA | |
| IL_8VVV_005 | 1/5/30:37, 1/5/44:52 | 9x8 Sarcin-Ricin; G-bulge | geometric IL_4WF9_008 IL_93502.1 | |
| IL_8VVV_006 | 1/5/81:88, 1/5/96:102 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_8CRE_006 NA | |
| IL_8VVV_007 | 1/5/118:121, 1/5/152:153 | No text annotation | geometric IL_6XJQ_007 IL_36175.2 | |
| IL_8VVV_008 | 1/5/118:122, 1/5/147:153 | No text annotation | ||
| IL_8VVV_009 | 1/5/121:122, 1/5/147:152 | No text annotation | geometric IL_8CRE_007 NA | |
| IL_8VVV_010 | 1/5/125:126, 1/5/142:144 | Single bulged C | geometric IL_1DQF_001 NA | |
| IL_8VVV_011 | 1/5/168:173, 1/5/263:267 | No text annotation | ||
| IL_8VVV_012 | 1/5/180:189, 1/5/252:256 | No text annotation | ||
| IL_8VVV_013 | 1/5/195:196, 1/5/244:246 | Single bulged C | geometric IL_1DQF_001 NA | |
| IL_8VVV_014 | 1/5/199:201, 1/5/214:215 | No text annotation | geometric IL_8CRE_013 NA | |
| IL_8VVV_015 | 1/5/339:342, 1/8/32:33 | Minor groove platform | geometric IL_9DFE_073 IL_24264.1 | |
| IL_8VVV_016 | 1/5/348:350, 1/8/25:26 | Single bulged A | geometric IL_8CRE_014 NA | |
| IL_8VVV_017 | 1/5/387:390, 1/5/401:414 | No text annotation | geometric IL_8CRE_015 NA | |
| IL_8VVV_018 | 1/5/415:421, 1/8/13:19 | Triple sheared with non-canonical cWW | geometric IL_5J7L_245 NA | |
| IL_8VVV_019 | 1/5/443:446, 1/5/1306:1310 | No text annotation | ||
| IL_8VVV_020 | 1/5/448:450, 1/5/1303:1304 | No text annotation | ||
| IL_8VVV_021 | 1/5/459:460, 1/5/696:698 | Single bulged C | geometric IL_4WF9_035 IL_05642.2 | |
| IL_8VVV_022 | 1/5/462:464, 1/5/692:694 | Isolated non-canonical cWW pair | geometric IL_8CRE_045 NA | |
| IL_8VVV_023 | 1/5/466:472, 1/5/683:690 | No text annotation | ||
| IL_8VVV_024 | 1/5/480:483, 1/5/673:675 | Isolated cWS basepair | geometric IL_5J7L_286 NA | |
| IL_8VVV_025 | 1/5/483:486, 1/5/672:673 | No text annotation | ||
| IL_8VVV_026 | 1/5/488:489, 1/5/666:670 | Multiple bulged bases | geometric IL_7Q80_001 IL_05670.1 | |
| IL_8VVV_027 | 1/5/492:494, 1/5/662:663 | Single bulged U | geometric IL_4WF9_030 IL_97561.3 | |
| IL_8VVV_029 | 1/5/509:511, 1/5/650:651 | Single bulged A | geometric IL_6WPI_001 IL_14190.2 | |
| IL_8VVV_032 | 1/5/710:711, 1/5/1292:1294 | Single bulged G | geometric IL_4LFB_036 IL_28408.2 | |
| IL_8VVV_033 | 1/5/724:725, 1/5/947:950 | Multiple bulged bases | geometric IL_7Q80_003 IL_05670.1 | |
| IL_8VVV_034 | 1/5/728:732, 1/5/943:944 | No text annotation | ||
| IL_8VVV_035 | 1/5/733:736, 1/5/932:942 | No text annotation | ||
| IL_8VVV_036 | 1/5/738:741, 1/5/927:930 | No text annotation | geometric IL_5J7L_341 NA | |
| IL_8VVV_037 | 1/5/742:745, 1/5/923:926 | Tandem non-canonical cWW pairs | geometric IL_6JDV_002 IL_15225.2 | |
| IL_8VVV_038 | 1/5/747:754, 1/5/913:921 | No text annotation | geometric IL_8CRE_022 NA | |
| IL_8VVV_040 | 1/5/1088:1090, 1/5/1219:1223 | Isolated near basepair | geometric IL_7A0S_030 IL_42997.5 | |
| IL_8VVV_041 | 1/5/1092:1093, 1/5/1215:1217 | No text annotation | ||
| IL_8VVV_044 | 1/5/1363:1366, 1/5/1385:1388 | No text annotation | ||
| IL_8VVV_045 | 1/5/1363:1367, 1/5/1382:1388 | No text annotation | ||
| IL_8VVV_046 | 1/5/1366:1367, 1/5/1382:1385 | Single bulged A | geometric IL_4V9F_090 IL_73464.1 | |
| IL_8VVV_047 | 1/5/1431:1435, 1/5/1461:1466 | Triple sheared related | geometric IL_4V9F_018 IL_67427.1 | |
| IL_8VVV_048 | 1/5/1437:1440, 1/5/1456:1459 | Double sheared | geometric IL_4LFB_060 IL_58355.2 | |
| IL_8VVV_049 | 1/5/1473:1474, 1/5/1502:1504 | Single bulged A | geometric IL_8CRE_026 NA | |
| IL_8VVV_050 | 1/5/1480:1482, 1/5/1495:1496 | Single stack bend | geometric IL_7A0S_005 IL_15011.2 | |
| IL_8VVV_051 | 1/5/1526:1528, 1/5/1661:1663 | Isolated non-canonical cWW pair | geometric IL_8P9A_255 IL_01003.3 | |
| IL_8VVV_052 | 1/5/1528:1532, 1/5/1654:1661 | No text annotation | geometric IL_8CRE_030 NA | |
| IL_8VVV_053 | 1/5/1556:1557, 1/5/1582:1584 | Single bulged G | geometric IL_4LVW_002 IL_28408.2 | |
| IL_8VVV_054 | 1/5/1557:1561, 1/5/1578:1582 | Triple sheared | geometric IL_4V9F_027 IL_15190.2 | |
| IL_8VVV_055 | 1/5/1592:1595, 1/5/1611:1613 | No text annotation | geometric IL_8CRE_034 NA | |
| IL_8VVV_056 | 1/5/1596:1598, 1/5/1609:1610 | Single bulged U | geometric IL_8P9A_260 IL_97561.3 | |
| IL_8VVV_057 | 1/5/1630:1632, 1/5/1642:1646 | No text annotation | geometric IL_8CRE_036 NA | |
| IL_8VVV_058 | 1/5/1677:1679, 1/5/1688:1690 | Isolated non-canonical cWW pair | geometric IL_8CRE_037 NA | |
| IL_8VVV_059 | 1/5/1692:1694, 1/5/1854:1857 | No text annotation | ||
| IL_8VVV_060 | 1/5/1700:1727, 1/5/1847:1848 | No text annotation | ||
| IL_8VVV_061 | 1/5/1729:1731, 1/5/1844:1845 | No text annotation | geometric IL_8CRE_040 NA | |
| IL_8VVV_062 | 1/5/1738:1743, 1/5/1798:1803 | No text annotation | ||
| IL_8VVV_063 | 1/5/1743:1744, 1/5/1796:1798 | Minor groove platform | geometric IL_8CRE_042 NA | |
| IL_8VVV_064 | 1/5/1745:1750, 1/5/1792:1795 | C-loop with bulged stacked A's | geometric IL_8P9A_268 IL_16301.1 | |
| IL_8VVV_065 | 1/5/1752:1755, 1/5/1787:1790 | Tandem non-canonical cWW pairs | geometric IL_8P9A_269 IL_71194.2 | |
| IL_8VVV_066 | 1/5/1755:1757, 1/5/1785:1787 | Isolated non-canonical cWW pair | geometric IL_8P9A_270 IL_01003.3 | |
| IL_8VVV_067 | 1/5/1759:1762, 1/5/1782:1783 | No text annotation | ||
| IL_8VVV_069 | 1/5/1820:1822, 1/5/1829:1830 | No text annotation | geometric IL_8CRE_048 NA | |
| IL_8VVV_070 | 1/5/1864:1866, 1/5/1880:1882 | Isolated non-canonical cWW pair | geometric IL_8P9A_274 IL_01003.3 | |
| IL_8VVV_071 | 1/5/1911:1915, 1/5/2073:2077 | UAA/GAN | geometric IL_8CRE_051 NA | |
| IL_8VVV_072 | 1/5/1917:1924, 1/5/2070:2071 | SSU/LSU pseudoknot | geometric IL_9DFE_036 IL_11411.1 | |
| IL_8VVV_073 | 1/5/1924:1926, 1/5/2069:2070 | Single bulged G | geometric IL_8TSV_002 IL_28408.2 | |
| IL_8VVV_074 | 1/5/1926:1928, 1/5/2068:2069 | No text annotation | ||
| IL_8VVV_075 | 1/5/1932:1939, 1/5/2059:2064 | No text annotation | geometric IL_8CRE_054 NA | |
| IL_8VVV_076 | 1/5/1939:1950, 1/5/2044:2059 | No text annotation | geometric IL_8P9A_280 IL_34501.1 | |
| IL_8VVV_077 | 1/5/1952:1954, 1/5/2041:2042 | Single bulged U | geometric IL_8P9A_281 IL_97561.3 | |
| IL_8VVV_078 | 1/5/1963:1971, 1/5/2028:2032 | Kink-turn | geometric IL_8CRE_057 NA | |
| IL_8VVV_079 | 1/5/1979:1984, 1/5/1994:1999 | No text annotation | ||
| IL_8VVV_080 | 1/5/2007:2011, 1/5/2020:2022 | Major groove platform with extra cWW | geometric IL_1MMS_002 NA | |
| IL_8VVV_081 | 1/5/2089:2091, 1/5/2278:2279 | Single bulged U | geometric IL_8P9A_260 IL_97561.3 | |
| IL_8VVV_082 | 1/5/2296:2298, 1/5/2348:2351 | No text annotation | geometric IL_8P9A_285 IL_42997.5 | |
| IL_8VVV_083 | 1/5/2305:2307, 1/5/2340:2341 | Single bulged A | geometric IL_3OXE_001 IL_14190.2 | |
| IL_8VVV_084 | 1/5/2308:2315, 1/5/2335:2339 | Kink-turn | geometric IL_5J7L_288 NA | |
| IL_8VVV_085 | 1/5/2318:2320, 1/5/2331:2332 | Single bulged A | geometric IL_7DLZ_001 NA | |
| IL_8VVV_086 | 1/5/2364:2370, 1/5/3864:3869 | 7x6 Sarcin-Ricin; G-bulge | geometric IL_8CRE_065 NA | |
| IL_8VVV_087 | 1/5/2421:2425, 1/5/2433:2435 | C-loop | geometric IL_4MGN_001 IL_63596.12 | |
| IL_8VVV_088 | 1/5/2452:2456, 1/5/2515:2520 | UAA/GAN | geometric IL_8CRE_067 NA | |
| IL_8VVV_090 | 1/5/2548:2553, 1/5/2778:2780 | No text annotation | ||
| IL_8VVV_091 | 1/5/2555:2556, 1/5/2774:2776 | Single bulged U | geometric IL_2R8S_004 IL_97561.3 | |
| IL_8VVV_092 | 1/5/2595:2599, 1/5/2758:2762 | Triple sheared | geometric IL_8P9A_295 IL_15190.2 | |
| IL_8VVV_093 | 1/5/2619:2620, 1/5/2730:2732 | Single bulged A | geometric IL_3B31_001 IL_14190.2 | |
| IL_8VVV_094 | 1/5/2620:2621, 1/5/2728:2730 | Single stack bend | geometric IL_7MLX_001 IL_15011.2 | |
| IL_8VVV_095 | 1/5/2652:2654, 1/5/2691:2694 | No text annotation | ||
| IL_8VVV_096 | 1/5/2657:2659, 1/5/2687:2688 | Single bulged G | geometric IL_6TFF_002 IL_28408.2 | |
| IL_8VVV_097 | 1/5/2662:2668, 1/5/2678:2684 | No text annotation | geometric IL_8P9A_301 IL_93476.1 | |
| IL_8VVV_098 | 1/5/2710:2711, 1/5/2716:2718 | No text annotation | ||
| IL_8VVV_099 | 1/5/2838:2844, 1/5/3856:3859 | No text annotation | geometric IL_8CRE_079 NA | |
| IL_8VVV_100 | 1/5/2850:2852, 1/5/3848:3850 | No text annotation | geometric IL_8P9A_303 IL_10432.1 | |
| IL_8VVV_101 | 1/5/2853:2856, 1/5/3846:3847 | Major groove platform; stack outside cWW | geometric IL_8P9A_304 IL_74641.2 | |
| IL_8VVV_102 | 1/5/2853:2861, 1/5/3843:3847 | No text annotation | geometric IL_8P9A_305 IL_80252.1 | |
| IL_8VVV_103 | 1/5/2856:2861, 1/5/3843:3846 | No text annotation | geometric IL_8P9A_306 IL_28217.1 | |
| IL_8VVV_104 | 1/5/2873:2878, 1/5/2883:2889 | No text annotation | geometric IL_8CRE_084 NA | |
| IL_8VVV_105 | 1/5/2895:2897, 1/5/3616:3618 | Isolated non-canonical cWW pair | geometric IL_8P9A_308 IL_01003.3 | |
| IL_8VVV_106 | 1/5/2902:2903, 1/5/3608:3611 | No text annotation | geometric IL_8P9A_309 IL_18824.1 | |
| IL_8VVV_107 | 1/5/3638:3639, 1/5/3833:3835 | Single bulged A | geometric IL_4V9F_064 IL_14190.2 | |
| IL_8VVV_108 | 1/5/3666:3671, 1/5/3683:3690 | No text annotation | geometric IL_8P9A_311 IL_14684.1 | |
| IL_8VVV_109 | 1/5/3706:3709, 1/5/3755:3756 | Minor groove platform, major groove intercalation | geometric IL_4V9F_066 IL_55206.1 | |
| IL_8VVV_110 | 1/5/3710:3711, 1/5/3751:3754 | Major groove intercalation | geometric IL_4V9F_067 IL_71421.2 | |
| IL_8VVV_111 | 1/5/3714:3716, 1/5/3747:3748 | Single stack bend | geometric IL_7A0S_054 IL_15011.2 | |
| IL_8VVV_112 | 1/5/3716:3720, 1/5/3745:3747 | No text annotation | ||
| IL_8VVV_113 | 1/5/3721:3727, 1/5/3738:3744 | No text annotation | geometric IL_8CRE_093 NA | |
| IL_8VVV_114 | 1/5/3786:3787, 1/5/3817:3820 | No text annotation | geometric IL_8CRE_094 NA | |
| IL_8VVV_115 | 1/5/3787:3798, 1/5/3814:3817 | No text annotation | geometric IL_8CRE_095 NA | |
| IL_8VVV_116 | 1/5/3901:3904, 1/5/4569:4571 | No text annotation | geometric IL_8CRE_096 NA | |
| IL_8VVV_117 | 1/5/3906:3908, 1/5/4564:4567 | No text annotation | geometric IL_8CRE_097 NA | |
| IL_8VVV_118 | 1/5/3919:3921, 1/5/4394:4395 | No text annotation | geometric IL_8CRE_098 NA | |
| IL_8VVV_119 | 1/5/3922:3923, 1/5/4390:4393 | Minor groove platform | geometric IL_8P9A_322 IL_34520.3 | |
| IL_8VVV_120 | 1/5/3933:3935, 1/5/4187:4190 | Isolated tHS basepair with bulges | geometric IL_5J7L_325 NA | |
| IL_8VVV_121 | 1/5/4088:4094, 1/5/4167:4170 | No text annotation | geometric IL_8CRE_106 NA | |
| IL_8VVV_124 | 1/5/4197:4198, 1/5/4208:4210 | Single bulged A | geometric IL_8P9A_325 IL_14190.2 | |
| IL_8VVV_125 | 1/5/4249:4251, 1/5/4269:4273 | No text annotation | geometric IL_8P9A_326 IL_14250.1 | |
| IL_8VVV_126 | 1/5/4297:4299, 1/5/4323:4324 | Single bulged A | geometric IL_8CRE_014 NA | |
| IL_8VVV_127 | 1/5/4301:4304, 1/5/4318:4321 | Tandem non-canonical cWW pairs | geometric IL_8CRE_440 IL_15225.2 | |
| IL_8VVV_128 | 1/5/4353:4356, 1/5/4370:4371 | Single stack bend | geometric IL_8P9A_328 IL_15011.2 | |
| IL_8VVV_129 | 1/5/4406:4411, 1/5/4445:4450 | No text annotation | ||
| IL_8VVV_130 | 1/5/4411:4413, 1/5/4441:4445 | No text annotation | geometric IL_8CRE_113 NA | |
| IL_8VVV_131 | 1/5/4418:4422, 1/5/4432:4436 | Double sheared with non-canonical cWW | geometric IL_8CRE_114 NA | |
| IL_8VVV_132 | 1/5/4459:4460, 1/5/4532:4534 | No text annotation | geometric IL_8CRE_115 NA | |
| IL_8VVV_133 | 1/5/4462:4464, 1/5/4526:4530 | Isolated non-canonical cWW with bulges | geometric IL_8CRE_116 NA | |
| IL_8VVV_134 | 1/5/4464:4465, 1/5/4523:4526 | No text annotation | geometric IL_8P9A_336 IL_44609.2 | |
| IL_8VVV_135 | 1/5/4472:4474, 1/5/4495:4497 | Isolated non-canonical cWW pair | geometric IL_4YHW_002 IL_01003.3 | |
| IL_8VVV_136 | 1/5/4472:4476, 1/5/4491:4497 | No text annotation | ||
| IL_8VVV_137 | 1/5/4474:4476, 1/5/4491:4495 | No text annotation | geometric IL_3DD2_004 IL_09353.1 | |
| IL_8VVV_138 | 1/5/4501:4503, 1/5/4509:4511 | Isolated non-canonical cWW pair | geometric IL_8CRE_121 NA | |
| IL_8VVV_139 | 1/5/4543:4544, 1/5/4553:4555 | Single bulged A | geometric IL_8P9A_399 IL_14190.2 | |
| IL_8VVV_140 | 1/5/4586:4588, 1/5/4727:4729 | Isolated cWH basepair | geometric IL_3R1C_017 IL_10892.2 | |
| IL_8VVV_141 | 1/5/4588:4591, 1/5/4723:4727 | Double sheared | geometric IL_8P9A_342 IL_58355.2 | |
| IL_8VVV_142 | 1/5/4596:4598, 1/5/4624:4626 | Isolated non-canonical cWW pair | geometric IL_2O3V_001 IL_71625.3 | |
| IL_8VVV_143 | 1/5/4602:4609, 1/5/4614:4620 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_8CRE_125 NA | |
| IL_8VVV_144 | 1/5/4630:4635, 1/5/4675:4679 | No text annotation | ||
| IL_8VVV_145 | 1/5/4638:4643, 1/5/4668:4672 | No text annotation | geometric IL_8P9A_346 IL_98200.1 | |
| IL_8VVV_146 | 1/5/4644:4646, 1/5/4665:4667 | Isolated cWH basepair | geometric IL_3R1C_012 IL_10892.2 | |
| IL_8VVV_147 | 1/5/4647:4648, 1/5/4661:4664 | Multiple bulged bases | geometric IL_5J7L_349 NA | |
| IL_8VVV_148 | 1/5/4686:4691, 1/5/4711:4716 | UAA/GAN with extra cWW | geometric IL_5J7L_350 NA | |
| IL_8VVV_150 | 1/5/4762:4772, 1/5/4874:4883 | No text annotation | ||
| IL_8VVV_151 | 1/5/4775:4779, 1/5/4868:4871 | Tandem non-canonical cWW pairs | geometric IL_7A0S_040 IL_71194.2 | |
| IL_8VVV_152 | 1/5/4891:4894, 1/5/4937:4940 | Tandem non-canonical cWW pairs | geometric IL_4XW0_002 IL_71194.2 | |
| IL_8VVV_153 | 1/5/4896:4902, 1/5/4930:4935 | No text annotation | ||
| IL_8VVV_155 | 1/5/4978:4981, 1/5/4989:4992 | Tandem non-canonical cWW pairs | geometric IL_8CRE_135 NA | |
| IL_8VVV_156 | 1/5/4998:5000, 1/5/5063:5065 | Isolated non-canonical cWW pair | geometric IL_8K85_007 IL_01003.3 | |
| IL_8VVV_157 | 1/5/5002:5003, 1/5/5059:5061 | No text annotation | ||
| IL_8VVV_158 | 1/5/5006:5008, 1/5/5051:5056 | No text annotation | geometric IL_8P9A_359 IL_00086.1 | |
| IL_8VVV_159 | 1/5/5009:5015, 1/5/5045:5050 | No text annotation | ||
| IL_8VVV_160 | 1/5/5018:5020, 1/5/5041:5042 | Single bulged C | geometric IL_6XKO_001 IL_05642.2 | |
| IL_8VVV_161 | 1/5/5020:5023, 1/5/5038:5041 | Double sheared | geometric IL_8CRE_141 NA | |
| IL_8VVV_162 | 1/7/15:16, 1/7/62:64 | Single bulged C | geometric IL_3W3S_001 IL_05642.2 | |
| IL_8VVV_163 | 1/7/21:27, 1/7/52:57 | No text annotation | geometric IL_8OI5_135 IL_41504.1 | |
| IL_8VVV_164 | 1/7/28:29, 1/7/48:51 | No text annotation | geometric IL_9DFE_112 IL_73108.2 | |
| IL_8VVV_165 | 1/7/32:36, 1/7/41:45 | Symmetric double minor groove platform | geometric IL_4V9F_104 IL_58103.12 | |
| IL_8VVV_166 | 1/7/71:78, 1/7/98:104 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_7A0S_007 IL_62167.3 | |
| IL_8VVV_167 | 1/7/79:81, 1/7/95:97 | Isolated non-canonical cWW pair | geometric IL_8CRE_473 IL_71625.3 | |
| IL_8VVV_168 | 1/7/82:85, 1/7/92:94 | Isolated non-canonical cWW pair | geometric IL_8OI5_140 IL_01003.3 | |
| IL_8VVV_169 | 1/8/64:66, 1/8/92:95 | Isolated non-canonical cWW with bulges | geometric IL_7ELQ_002 NA | |
| IL_8VVV_170 | 1/9/23:25, 1/9/649:651 | Isolated non-canonical cWW pair | geometric IL_8P9A_330 IL_01003.3 | |
| IL_8VVV_171 | 1/9/34:36, 1/9/519:521 | Isolated non-canonical cWW pair | geometric IL_7QQP_008 IL_01003.3 | |
| IL_8VVV_172 | 1/9/37:40, 1/9/514:518 | Double sheared; A in syn | geometric IL_8T29_001 IL_58355.2 | |
| IL_8VVV_173 | 1/9/41:47, 1/9/479:481 | No text annotation | geometric IL_8CRE_393 IL_88082.2 | |
| IL_8VVV_175 | 1/9/57:62, 1/9/86:88 | No text annotation | geometric IL_8P9A_378 IL_61299.6 | |
| IL_8VVV_177 | 1/9/108:115, 1/9/348:353 | No text annotation | ||
| IL_8VVV_178 | 1/9/116:121, 1/9/343:347 | No text annotation | geometric IL_8CRE_399 IL_31545.1 | |
| IL_8VVV_179 | 1/9/130:144, 1/9/175:182 | No text annotation | ||
| IL_8VVV_180 | 1/9/145:151, 1/9/167:174 | No text annotation | geometric IL_8CRE_400 IL_24485.1 | |
| IL_8VVV_181 | 1/9/152:154, 1/9/164:166 | Isolated cWH basepair | geometric IL_3R1C_012 IL_10892.2 | |
| IL_8VVV_183 | 1/9/216:219, 1/9/302:309 | No text annotation | ||
| IL_8VVV_184 | 1/9/223:288, 1/9/295:298 | No text annotation | ||
| IL_8VVV_185 | 1/9/312:314, 1/9/336:337 | Single bulged A | geometric IL_8P9A_388 IL_14190.2 | |
| IL_8VVV_187 | 1/9/359:364, 1/9/396:403 | Kink-turn with non-sequential stacking | geometric IL_8CRE_408 IL_46174.4 | |
| IL_8VVV_188 | 1/9/366:371, 1/9/393:394 | No text annotation | geometric IL_8P9A_392 IL_01372.1 | |
| IL_8VVV_189 | 1/9/411:413, 1/9/424:429 | No text annotation | geometric IL_8CRE_410 IL_93336.1 | |
| IL_8VVV_190 | 1/9/437:439, 1/9/454:456 | Isolated cWH basepair | geometric IL_8CRE_411 IL_10892.2 | |
| IL_8VVV_192 | 1/9/487:489, 1/9/511:512 | Single bulged U | geometric IL_5J7L_017 NA | |
| IL_8VVV_193 | 1/9/491:495, 1/9/508:509 | C-loop | geometric IL_8CRE_414 IL_26900.1 | |
| IL_8VVV_194 | 1/9/495:496, 1/9/506:508 | No text annotation | geometric IL_8CRE_415 IL_28408.2 | |
| IL_8VVV_197 | 1/9/563:565, 1/9/585:592 | No text annotation | geometric IL_8CRE_418 IL_02511.1 | |
| IL_8VVV_199 | 1/9/598:606, 1/9/636:638 | No text annotation | ||
| IL_8VVV_201 | 1/9/608:617, 1/9/624:635 | No text annotation | ||
| IL_8VVV_202 | 1/9/663:665, 1/9/1162:1164 | Isolated non-canonical cWW pair | geometric IL_1Y27_001 IL_01003.3 | |
| IL_8VVV_203 | 1/9/665:671, 1/9/1161:1162 | No text annotation | geometric IL_8P9A_405 IL_20847.1 | |
| IL_8VVV_204 | 1/9/673:675, 1/9/1030:1032 | Isolated non-canonical cWW pair | geometric IL_4WF9_042 IL_01003.3 | |
| IL_8VVV_205 | 1/9/676:680, 1/9/1025:1029 | tSH-tHW-tHS | geometric IL_8CRE_426 IL_05821.1 | |
| IL_8VVV_209 | 1/9/802:803, 1/9/860:863 | No text annotation | geometric IL_8P9A_412 IL_73108.2 | |
| IL_8VVV_210 | 1/9/805:807, 1/9/856:858 | Isolated non-canonical cWW pair | geometric IL_7OFZ_001 NA | |
| IL_8VVV_211 | 1/9/807:815, 1/9/849:856 | No text annotation | ||
| IL_8VVV_212 | 1/9/874:876, 1/9/910:912 | Isolated non-canonical cWW pair | geometric IL_6OL3_002 IL_01003.3 | |
| IL_8VVV_214 | 1/9/922:923, 1/9/1019:1022 | Major groove platform; stack outside cWW | geometric IL_6N5P_003 IL_74641.2 | |
| IL_8VVV_215 | 1/9/925:926, 1/9/1015:1017 | Single bulged U | geometric IL_6UFH_004 IL_97561.3 | |
| IL_8VVV_216 | 1/9/928:931, 1/9/1010:1013 | Tandem non-canonical cWW pairs | geometric IL_8CRE_433 IL_15225.2 | |
| IL_8VVV_217 | 1/9/931:935, 1/9/1007:1010 | Tandem non-canonical cWW pairs | geometric IL_8CRE_434 IL_15225.2 | |
| IL_8VVV_218 | 1/9/943:945, 1/9/981:983 | Isolated non-canonical cWW pair | geometric IL_4RBZ_002 IL_01003.3 | |
| IL_8VVV_219 | 1/9/952:956, 1/9/967:974 | Kink-turn | geometric IL_6UFM_001 IL_71972.1 | |
| IL_8VVV_220 | 1/9/1042:1047, 1/9/1071:1073 | No text annotation | geometric IL_8CRE_437 IL_31359.1 | |
| IL_8VVV_221 | 1/9/1047:1051, 1/9/1067:1071 | tSH-tHW-tHS | geometric IL_8CRE_438 IL_05821.1 | |
| IL_8VVV_222 | 1/9/1091:1093, 1/9/1152:1158 | No text annotation | geometric IL_8CRE_439 IL_82706.2 | |
| IL_8VVV_223 | 1/9/1098:1103, 1/9/1129:1134 | No text annotation | geometric IL_3IGI_015 IL_95349.1 | |
| IL_8VVV_225 | 1/9/1168:1175, 1/9/1186:1191 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | geometric IL_8CRE_442 IL_84044.1 | |
| IL_8VVV_226 | 1/9/1203:1204, 1/9/1694:1696 | Single bulged A | geometric IL_5J7L_039 NA | |
| IL_8VVV_227 | 1/9/1206:1208, 1/9/1691:1692 | Single bulged G | geometric IL_8P9A_430 IL_28408.2 | |
| IL_8VVV_228 | 1/9/1214:1217, 1/9/1681:1685 | C-loop | geometric IL_8CRE_445 IL_63596.12 | |
| IL_8VVV_229 | 1/9/1230:1232, 1/9/1526:1528 | Isolated non-canonical cWW pair | geometric IL_4WF9_083 IL_01003.3 | |
| IL_8VVV_230 | 1/9/1235:1236, 1/9/1521:1523 | Minor groove platform | geometric IL_8P9A_433 IL_34520.3 | |
| IL_8VVV_236 | 1/9/1325:1327, 1/9/1502:1503 | No text annotation | geometric IL_8CRE_451 IL_97561.3 | |
| IL_8VVV_237 | 1/9/1329:1333, 1/9/1498:1500 | No text annotation | geometric IL_8P9A_438 IL_82453.1 | |
| IL_8VVV_238 | 1/9/1329:1335, 1/9/1492:1500 | No text annotation | geometric IL_8P9A_439 IL_99893.1 | |
| IL_8VVV_239 | 1/9/1333:1335, 1/9/1492:1498 | No text annotation | geometric IL_8P9A_440 IL_34117.1 | |
| IL_8VVV_240 | 1/9/1337:1338, 1/9/1488:1490 | Single bulged A | geometric IL_8CRE_455 IL_14190.2 | |
| IL_8VVV_241 | 1/9/1347:1349, 1/9/1380:1382 | Isolated cWH basepair | geometric IL_8P9A_442 IL_10892.2 | |
| IL_8VVV_242 | 1/9/1363:1365, 1/9/1374:1375 | Minor groove platform | geometric IL_8CRE_457 IL_34520.3 | |
| IL_8VVV_243 | 1/9/1395:1399, 1/9/1447:1450 | Tandem non-canonical cWW pairs | geometric IL_8P9A_419 IL_15225.2 | |
| IL_8VVV_244 | 1/9/1402:1405, 1/9/1441:1444 | No text annotation | geometric IL_8CRE_481 IL_78800.2 | |
| IL_8VVV_247 | 1/9/1541:1550, 1/9/1582:1592 | No text annotation | ||
| IL_8VVV_248 | 1/9/1550:1558, 1/9/1577:1582 | No text annotation | ||
| IL_8VVV_250 | 1/9/1604:1610, 1/9/1629:1635 | No text annotation | ||
| IL_8VVV_251 | 1/9/1700:1702, 1/9/1833:1836 | No text annotation | geometric IL_4LFB_056 IL_18228.1 | |
| IL_8VVV_252 | 1/9/1702:1705, 1/9/1829:1833 | No text annotation | geometric IL_8CRE_467 IL_25873.2 | |
| IL_8VVV_253 | 1/9/1706:1708, 1/9/1826:1828 | Isolated non-canonical cWW pair | geometric IL_8CRE_468 IL_01003.3 | |
| IL_8VVV_254 | 1/9/1708:1711, 1/9/1822:1826 | No text annotation | geometric IL_8BH9_001 IL_65740.1 | |
| IL_8VVV_255 | 1/9/1714:1716, 1/9/1817:1819 | Isolated non-canonical cWW pair | geometric IL_8CRE_470 IL_01003.3 | |
| IL_8VVV_256 | 1/9/1717:1720, 1/9/1813:1816 | Double sheared | geometric IL_8CRE_471 IL_58355.2 | |
| IL_8VVV_257 | 1/9/1720:1722, 1/9/1812:1813 | No text annotation | geometric IL_8CRE_472 IL_97561.3 | |
| IL_8VVV_258 | 1/9/1729:1731, 1/9/1803:1805 | Isolated non-canonical cWW pair | geometric IL_8CRE_473 IL_71625.3 | |
| IL_8VVV_259 | 1/9/1733:1736, 1/9/1798:1801 | Double sheared | geometric IL_8CRE_474 IL_58355.2 | |
| IL_8VVV_260 | 1/9/1739:1741, 1/9/1793:1795 | Isolated non-canonical cWW pair | geometric IL_4E48_002 IL_01003.3 | |
| IL_8VVV_261 | 1/9/1742:1746, 1/9/1788:1792 | Triple sheared | geometric IL_9DFE_075 IL_15190.2 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_8VVV_028 | Single bulged C | ||
| IL_8VVV_030 | Single stack bend | ||
| IL_8VVV_031 | No text annotation | ||
| IL_8VVV_039 | Isolated non-canonical cWW pair | ||
| IL_8VVV_042 | Single stack bend | ||
| IL_8VVV_043 | Isolated cWH basepair | ||
| IL_8VVV_068 | Isolated non-canonical cWW pair | ||
| IL_8VVV_089 | Minor groove platform | ||
| IL_8VVV_122 | Single stack bend | ||
| IL_8VVV_123 | Single stack bend | ||
| IL_8VVV_149 | No text annotation | ||
| IL_8VVV_154 | No text annotation | ||
| IL_8VVV_174 | Minor groove platform | ||
| IL_8VVV_176 | No text annotation | ||
| IL_8VVV_182 | No text annotation | ||
| IL_8VVV_186 | No text annotation | ||
| IL_8VVV_191 | No text annotation | ||
| IL_8VVV_195 | Single bulged A | ||
| IL_8VVV_196 | Isolated non-canonical cWW pair | ||
| IL_8VVV_198 | Tandem non-canonical cWW pairs | ||
| IL_8VVV_200 | Single bulged U | ||
| IL_8VVV_206 | Isolated non-canonical cWW pair | ||
| IL_8VVV_207 | Stack and bulge | ||
| IL_8VVV_208 | No text annotation | ||
| IL_8VVV_213 | Isolated non-canonical cWW pair | ||
| IL_8VVV_224 | Minor groove platform | ||
| IL_8VVV_231 | Isolated non-canonical cWW pair | ||
| IL_8VVV_232 | No text annotation | ||
| IL_8VVV_233 | No text annotation | ||
| IL_8VVV_234 | No text annotation | ||
| IL_8VVV_235 | No text annotation | ||
| IL_8VVV_245 | No text annotation | ||
| IL_8VVV_246 | Isolated non-canonical cWW pair | ||
| IL_8VVV_249 | Isolated non-canonical cWW pair | ||
| IL_8VVV_262 | No text annotation | ||
| IL_8VVV_263 | Single stack bend |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_8VVV_001 | 1/5/112:116, 1/5/155:160, 1/5/275:278 | No text annotation | ||
| J3_8VVV_002 | 1/5/351:367, 1/5/374:379, 1/8/21:24 | No text annotation | geometric J3_8P9A_045 J3_07616.1 | |
| J3_8VVV_003 | 1/5/380:387, 1/5/414:415, 1/8/19:20 | No text annotation | geometric J3_8P9A_046 J3_68715.1 | |
| J3_8VVV_004 | 1/5/380:390, 1/5/401:415, 1/8/19:20 | No text annotation | geometric J3_8CRE_006 NA | |
| J3_8VVV_005 | 1/5/451:455, 1/5/702:706, 1/5/1298:1302 | No text annotation | ||
| J3_8VVV_006 | 1/5/713:714, 1/5/960:983, 1/5/1284:1290 | No text annotation | ||
| J3_8VVV_007 | 1/5/988:990, 1/5/1076:1080, 1/5/1242:1279 | No text annotation | ||
| J3_8VVV_008 | 1/5/1537:1543, 1/5/1628:1630, 1/5/1646:1649 | No text annotation | geometric J3_8P9A_049 J3_46658.1 | |
| J3_8VVV_009 | 1/5/1551:1554, 1/5/1586:1590, 1/5/1615:1620 | No text annotation | geometric J3_8P9A_050 J3_21998.1 | |
| J3_8VVV_010 | 1/5/1732:1733, 1/5/1808:1812, 1/5/1838:1843 | No text annotation | ||
| J3_8VVV_012 | 1/5/2399:2405, 1/5/2811:2813, 1/5/2825:2828 | No text annotation | geometric J3_8P9A_053 J3_05025.1 | |
| J3_8VVV_013 | 1/5/2408:2411, 1/5/2791:2797, 1/5/2806:2808 | No text annotation | geometric J3_8CRE_014 NA | |
| J3_8VVV_014 | 1/5/2446:2451, 1/5/2521:2525, 1/5/2542:2543 | No text annotation | geometric J3_8P9A_055 J3_94309.1 | |
| J3_8VVV_015 | 1/5/2457:2462, 1/5/2471:2482, 1/5/2507:2514 | No text annotation | ||
| J3_8VVV_016 | 1/5/2557:2561, 1/5/2578:2581, 1/5/2763:2773 | No text annotation | ||
| J3_8VVV_017 | 1/5/2581:2582, 1/5/2591:2595, 1/5/2762:2763 | No text annotation | geometric J3_8P9A_087 J3_05348.1 | |
| J3_8VVV_018 | 1/5/2604:2608, 1/5/2743:2744, 1/5/2748:2753 | No text annotation | geometric J3_8P9A_058 J3_08594.1 | |
| J3_8VVV_019 | 1/5/3943:3945, 1/5/4080:4084, 1/5/4174:4179 | Kink-turn 3-way junction | geometric J3_5J7L_044 NA | |
| J3_8VVV_020 | 1/5/4097:4100, 1/5/4120:4135, 1/5/4161:4164 | No text annotation | ||
| J3_8VVV_021 | 1/5/4234:4236, 1/5/4337:4348, 1/5/4376:4381 | No text annotation | geometric J3_8CRE_021 NA | |
| J3_8VVV_022 | 1/5/4247:4249, 1/5/4273:4275, 1/5/4284:4289 | No text annotation | geometric J3_8P9A_062 J3_05327.1 | |
| J3_8VVV_023 | 1/5/4469:4472, 1/5/4497:4499, 1/5/4513:4519 | No text annotation | geometric J3_8CRE_023 NA | |
| J3_8VVV_024 | 1/5/4755:4760, 1/5/4885:4889, 1/5/4942:4957 | No text annotation | ||
| J3_8VVV_025 | 1/5/4976:4978, 1/5/4992:4997, 1/5/5066:5069 | No text annotation | ||
| J3_8VVV_026 | 1/7/9:14, 1/7/65:66, 1/7/109:110 | No text annotation | geometric J3_8OI5_025 J3_26985.1 | |
| J3_8VVV_027 | 1/8/44:45, 1/8/58:64, 1/8/95:99 | No text annotation | ||
| J3_8VVV_028 | 1/9/40:41, 1/9/481:487, 1/9/512:514 | No text annotation | geometric J3_8CRE_071 J3_58657.1 | |
| J3_8VVV_029 | 1/9/682:684, 1/9/918:922, 1/9/1022:1023 | No text annotation | geometric J3_8P9A_071 J3_01633.1 | |
| J3_8VVV_030 | 1/9/682:684, 1/9/918:923, 1/9/1019:1023 | No text annotation | geometric J3_8CRE_074 J3_17385.5 | |
| J3_8VVV_031 | 1/9/816:819, 1/9/829:831, 1/9/843:848 | No text annotation | geometric J3_8P9A_073 J3_97642.2 | |
| J3_8VVV_032 | 1/9/938:941, 1/9/985:993, 1/9/1000:1004 | No text annotation | geometric J3_8P9A_074 J3_23895.1 | |
| J3_8VVV_033 | 1/9/1094:1096, 1/9/1136:1140, 1/9/1147:1151 | No text annotation | ||
| J3_8VVV_034 | 1/9/1218:1221, 1/9/1645:1651, 1/9/1673:1680 | No text annotation | geometric J3_8CRE_078 J3_85722.1 | |
| J3_8VVV_035 | 1/9/1225:1228, 1/9/1530:1532, 1/9/1638:1641 | No text annotation | geometric J3_8CRE_079 J3_44359.1 | |
| J3_8VVV_036 | 1/9/1237:1244, 1/9/1255:1266, 1/9/1516:1520 | No text annotation | geometric J3_8CRE_080 J3_88451.1 | |
| J3_8VVV_037 | 1/9/1272:1277, 1/9/1320:1324, 1/9/1504:1510 | No text annotation | geometric J3_8CRE_081 J3_87797.2 | |
| J3_8VVV_038 | 1/9/1340:1345, 1/9/1384:1389, 1/9/1481:1486 | No text annotation | ||
| J3_8VVV_039 | 1/9/1350:1351, 1/9/1360:1363, 1/9/1375:1379 | No text annotation | geometric J3_8CRE_083 J3_76043.4 | |
| J3_8VVV_040 | 1/9/1391:1395, 1/9/1450:1456, 1/9/1470:1479 | No text annotation | ||
| J3_8VVV_041 | 1/9/1532:1536, 1/9/1597:1604, 1/9/1635:1638 | No text annotation | geometric J3_4LFB_009 J3_03192.1 | |
| J4_8VVV_001 | 1/5/111:112, 1/5/278:283, 1/5/304:310, 1/5/327:330 | No text annotation | ||
| J4_8VVV_002 | 1/5/196:199, 1/5/215:222, 1/5/226:228, 1/5/240:244 | No text annotation | ||
| J4_8VVV_003 | 1/5/2371:2377, 1/5/2395:2397, 1/5/2830:2835, 1/5/3862:3863 | No text annotation | ||
| J4_8VVV_004 | 1/5/2412:2416, 1/5/2440:2445, 1/5/2544:2545, 1/5/2783:2790 | No text annotation | ||
| J4_8VVV_005 | 1/5/2624:2625, 1/5/2643:2648, 1/5/2698:2704, 1/5/2724:2725 | No text annotation | ||
| J4_8VVV_006 | 1/5/3640:3644, 1/5/3656:3660, 1/5/3696:3700, 1/5/3827:3832 | No text annotation | ||
| J4_8VVV_007 | 1/5/3702:3704, 1/5/3758:3759, 1/5/3777:3786, 1/5/3820:3825 | No text annotation | ||
| J4_8VVV_008 | 1/5/4237:4241, 1/5/4295:4297, 1/5/4324:4325, 1/5/4334:4336 | No text annotation | ||
| J4_8VVV_009 | 1/5/4593:4596, 1/5/4626:4627, 1/5/4682:4684, 1/5/4718:4721 | No text annotation | ||
| J4_8VVV_010 | 1/9/98:106, 1/9/355:357, 1/9/405:409, 1/9/431:432 | No text annotation | ||
| J4_8VVV_011 | 1/9/671:673, 1/9/1032:1037, 1/9/1078:1089, 1/9/1160:1161 | No text annotation | ||
| J5_8VVV_001 | 1/5/20:21, 1/8/35:42, 1/8/101:106, 1/8/113:114, 1/8/136:137 | No text annotation | ||
| J5_8VVV_002 | 1/5/1341:1346, 1/5/1522:1525, 1/5/1664:1667, 1/5/2294:2296, 1/5/2351:2357 | No text annotation | ||
| J5_8VVV_003 | 1/5/2861:2869, 1/5/2893:2894, 1/5/3619:3620, 1/5/3624:3632, 1/5/3841:3843 | No text annotation | ||
| J5_8VVV_004 | 1/5/3909:3916, 1/5/4398:4406, 1/5/4450:4459, 1/5/4534:4540, 1/5/4558:4563 | No text annotation | ||
| J5_8VVV_005 | 1/5/3926:3929, 1/5/4194:4197, 1/5/4210:4211, 1/5/4233:4234, 1/5/4381:4387 | No text annotation | ||
| J5_8VVV_006 | 1/9/30:34, 1/9/521:527, 1/9/558:563, 1/9/592:595, 1/9/641:644 | No text annotation | ||
| J5_8VVV_007 | 1/9/30:34, 1/9/521:527, 1/9/558:565, 1/9/585:595, 1/9/641:644 | No text annotation | ||
| J5_8VVV_008 | 1/9/53:56, 1/9/89:96, 1/9/434:436, 1/9/457:459, 1/9/470:474 | No text annotation | ||
| J5_8VVV_009 | 1/9/123:129, 1/9/183:185, 1/9/214:215, 1/9/310:312, 1/9/337:341 | No text annotation | ||
| J5_8VVV_010 | 1/9/685:690, 1/9/736:744, 1/9/797:800, 1/9/865:874, 1/9/912:917 | No text annotation | ||
| J6_8VVV_001 | 1/5/21:26, 1/5/57:67, 1/5/74:78, 1/5/105:109, 1/5/332:339, 1/8/33:35 | No text annotation | ||
| J6_8VVV_002 | 1/5/1358:1361, 1/5/1390:1394, 1/5/1401:1405, 1/5/1424:1427, 1/5/1470:1472, 1/5/1505:1510 | No text annotation | ||
| J6_8VVV_003 | 1/5/3926:3929, 1/5/4194:4197, 1/5/4210:4211, 1/5/4233:4236, 1/5/4337:4348, 1/5/4376:4387 | No text annotation | ||
| J7_8VVV_001 | 1/5/1672:1677, 1/5/1690:1691, 1/5/1858:1861, 1/5/1885:1890, 1/5/1901:1905, 1/5/2083:2084, 1/5/2284:2289 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_8VVV_011 | No text annotation |
Coloring options: