HL_8VVV_011

3D structure

PDB id

8VVV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the nonrotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGAAG(A2M)

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVV_011 not in the Motif Atlas

Geometric match to HL_6UFH_002

Geometric discrepancy: 0.1306

The information below is about HL_6UFH_002

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

8VVV|1|5|U|393
8VVV|1|5|G|394
8VVV|1|5|A|395
8VVV|1|5|A|396
8VVV|1|5|G|397
8VVV|1|5|A2M|398

Current chains

Chain 5

28S rRNA

Nearby chains

Chain P

uL22