HL_8VVV_023

3D structure

PDB id

8VVV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the nonrotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUGGUGUG

Length

8 nucleotides

Bulged bases

8VVV|1|5|G|1827

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVV_023 not in the Motif Atlas

Homologous match to HL_8GLP_027

Geometric discrepancy: 0.1953

The information below is about HL_8GLP_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_63894.5

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

25

Unit IDs

8VVV|1|5|C|1822
8VVV|1|5|U|1823
8VVV|1|5|G|1824
8VVV|1|5|G|1825
8VVV|1|5|U|1826
8VVV|1|5|G|1827
8VVV|1|5|U|1828
8VVV|1|5|G|1829

Current chains

Chain 5

28S rRNA

Nearby chains

Chain D

uL18

Chain T

eL21

Chain b

eL29