HL_8VVV_027

3D structure

PDB id

8VVV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the nonrotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGUAACAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVV_027 not in the Motif Atlas

Geometric match to HL_8CRE_027

Geometric discrepancy: 0.1802

The information below is about HL_8CRE_027

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

8VVV|1|5|U|2012
8VVV|1|5|G|2013
8VVV|1|5|U|2014
8VVV|1|5|A|2015
8VVV|1|5|A|2016
8VVV|1|5|C|2017
8VVV|1|5|A|2018
8VVV|1|5|A|2019

Current chains

Chain 5

28S rRNA

Nearby chains

Chain m

eL40

Chain s

uL10

Chain v

eukaryotic elongation factor 2