HL_8VVV_030

3D structure

PDB id

8VVV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the nonrotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

ACGA(B8W)AACU

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: B8W

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVV_030 not in the Motif Atlas

Geometric match to HL_8CRE_030

Geometric discrepancy: 0.1695

The information below is about HL_8CRE_030

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.9

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

8VVV|1|5|A|2382
8VVV|1|5|C|2383
8VVV|1|5|G|2384
8VVV|1|5|A|2385
8VVV|1|5|B8W|2386
8VVV|1|5|A|2387
8VVV|1|5|A|2388
8VVV|1|5|C|2389
8VVV|1|5|U|2390

Current chains

Chain 5

28S rRNA

Nearby chains

Chain P

uL22

Chain R

eL19

Chain d

eL31