HL_8VVV_031

3D structure

PDB id

8VVV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the nonrotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AG(OMC)A(OMG)UU

Length

7 nucleotides

Bulged bases

8VVV|1|5|G|2427, 8VVV|1|5|U|2431

QA status

Modified nucleotides: OMC, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVV_031 not in the Motif Atlas

Geometric match to HL_9DFE_036

Geometric discrepancy: 0.2025

The information below is about HL_9DFE_036

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_49081.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

17

Unit IDs

8VVV|1|5|A|2426
8VVV|1|5|G|2427
8VVV|1|5|OMC|2428
8VVV|1|5|A|2429
8VVV|1|5|OMG|2430
8VVV|1|5|U|2431
8VVV|1|5|U|2432

Current chains

Chain 5

28S rRNA

Nearby chains

Chain P

uL22

Chain R

eL19

Chain l

eL39