HL_8VVV_037

3D structure

PDB id

8VVV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the nonrotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUUCUCUUU

Length

9 nucleotides

Bulged bases

8VVV|1|5|C|2633, 8VVV|1|5|U|2637

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVV_037 not in the Motif Atlas

Geometric match to HL_8P9A_148

Geometric discrepancy: 0.2352

The information below is about HL_8P9A_148

Detailed Annotation

Pseudoknot geometry

Broad Annotation

Pseudoknot geometry

Motif group

HL_22758.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

8VVV|1|5|G|2630
8VVV|1|5|U|2631
8VVV|1|5|U|2632
8VVV|1|5|C|2633
8VVV|1|5|U|2634
8VVV|1|5|C|2635
8VVV|1|5|U|2636
8VVV|1|5|U|2637
8VVV|1|5|U|2638

Current chains

Chain 5

28S rRNA

Nearby chains

Chain R

eL19

Chain U

eL22