HL_8VVV_047

3D structure

PDB id

8VVV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the nonrotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGCGGCG

Length

7 nucleotides

Bulged bases

8VVV|1|5|C|3679

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVV_047 not in the Motif Atlas

Geometric match to HL_6UFG_005

Geometric discrepancy: 0.248

The information below is about HL_6UFG_005

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

8VVV|1|5|C|3674
8VVV|1|5|G|3675
8VVV|1|5|C|3676
8VVV|1|5|G|3677
8VVV|1|5|G|3678
8VVV|1|5|C|3679
8VVV|1|5|G|3680

Current chains

Chain 5

28S rRNA

Nearby chains

Chain A

uL2

Chain G

eL8

Chain N

eL15