HL_8VVV_051

3D structure

PDB id

8VVV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the nonrotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGGAACG(P7G)GC

Length

10 nucleotides

Bulged bases

8VVV|1|5|A|3882, 8VVV|1|5|A|3883, 8VVV|1|5|C|3884

QA status

Modified nucleotides: P7G

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVV_051 not in the Motif Atlas

Geometric match to HL_8CRE_049

Geometric discrepancy: 0.1185

The information below is about HL_8CRE_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61996.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

8VVV|1|5|G|3879
8VVV|1|5|G|3880
8VVV|1|5|G|3881
8VVV|1|5|A|3882
8VVV|1|5|A|3883
8VVV|1|5|C|3884
8VVV|1|5|G|3885
8VVV|1|5|P7G|3886
8VVV|1|5|G|3887
8VVV|1|5|C|3888

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

uL3

Chain e

eL32