HL_8VVV_052

3D structure

PDB id

8VVV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the nonrotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

C(I4U)G(OMG)GGCGG

Length

9 nucleotides

Bulged bases

8VVV|1|5|G|4201

QA status

Modified nucleotides: I4U, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVV_052 not in the Motif Atlas

Geometric match to HL_8CRE_053

Geometric discrepancy: 0.1295

The information below is about HL_8CRE_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_85367.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

8VVV|1|5|C|4199
8VVV|1|5|I4U|4200
8VVV|1|5|G|4201
8VVV|1|5|OMG|4202
8VVV|1|5|G|4203
8VVV|1|5|G|4204
8VVV|1|5|C|4205
8VVV|1|5|G|4206
8VVV|1|5|G|4207

Current chains

Chain 5

28S rRNA

Nearby chains

Chain I

L10

Chain b

eL29