HL_8VVV_053
3D structure
- PDB id
- 8VVV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian ribosomes bound to Anisomycin in the nonrotated conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UCAAACGGUA(6MZ)CG
- Length
- 13 nucleotides
- Bulged bases
- 8VVV|1|5|A|4220, 8VVV|1|5|C|4227
- QA status
- Modified nucleotides: 6MZ
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8VVV_053 not in the Motif Atlas
- Geometric match to HL_4WF9_050
- Geometric discrepancy: 0.1367
- The information below is about HL_4WF9_050
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_02042.1
- Basepair signature
- cWW-tSH-tHH-tWW-F-F-F
- Number of instances in this motif group
- 12
Unit IDs
8VVV|1|5|U|4216
8VVV|1|5|C|4217
8VVV|1|5|A|4218
8VVV|1|5|A|4219
8VVV|1|5|A|4220
8VVV|1|5|C|4221
8VVV|1|5|G|4222
8VVV|1|5|G|4223
8VVV|1|5|U|4224
8VVV|1|5|A|4225
8VVV|1|5|6MZ|4226
8VVV|1|5|C|4227
8VVV|1|5|G|4228
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain I
- L10
- Chain T
- eL21
- Chain b
- eL29
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