HL_8VVV_056
3D structure
- PDB id
- 8VVV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian ribosomes bound to Anisomycin in the nonrotated conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UUCAG(OMU)ACG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: OMU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8VVV_056 not in the Motif Atlas
- Geometric match to HL_8P9A_169
- Geometric discrepancy: 0.3714
- The information below is about HL_8P9A_169
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_15296.1
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
8VVV|1|5|U|4307
8VVV|1|5|U|4308
8VVV|1|5|C|4309
8VVV|1|5|A|4310
8VVV|1|5|G|4311
8VVV|1|5|OMU|4312
8VVV|1|5|A|4313
8VVV|1|5|C|4314
8VVV|1|5|G|4315
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain Q
- eL18
- Chain T
- eL21
- Chain a
- uL15
- Chain o
- eL42
Coloring options: