HL_8VVV_063

3D structure

PDB id

8VVV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the nonrotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVV_063 not in the Motif Atlas

Geometric match to HL_3E5C_001

Geometric discrepancy: 0.1213

The information below is about HL_3E5C_001

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

8VVV|1|5|C|4609
8VVV|1|5|G|4610
8VVV|1|5|A|4611
8VVV|1|5|G|4612
8VVV|1|5|A|4613
8VVV|1|5|G|4614

Current chains

Chain 5

28S rRNA

Nearby chains

Chain H

uL6

Chain m

eL40

Chain v

eukaryotic elongation factor 2