HL_8VVV_065
3D structure
- PDB id
- 8VVV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian ribosomes bound to Anisomycin in the nonrotated conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CU(B8K)AACGCCUCUAAG
- Length
- 15 nucleotides
- Bulged bases
- 8VVV|1|5|G|4700, 8VVV|1|5|C|4704
- QA status
- Modified nucleotides: B8K
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8VVV_065 not in the Motif Atlas
- Geometric match to HL_8CRE_066
- Geometric discrepancy: 0.0796
- The information below is about HL_8CRE_066
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_74055.2
- Basepair signature
- cWW-tWH-cWH-tSH-tHW-tHW-tSW
- Number of instances in this motif group
- 7
Unit IDs
8VVV|1|5|C|4694
8VVV|1|5|U|4695
8VVV|1|5|B8K|4696
8VVV|1|5|A|4697
8VVV|1|5|A|4698
8VVV|1|5|C|4699
8VVV|1|5|G|4700
8VVV|1|5|C|4701
8VVV|1|5|C|4702
8VVV|1|5|U|4703
8VVV|1|5|C|4704
8VVV|1|5|U|4705
8VVV|1|5|A|4706
8VVV|1|5|A|4707
8VVV|1|5|G|4708
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain H
- uL6
- Chain O
- uL13
- Chain m
- eL40
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