HL_8VVV_080

3D structure

PDB id

8VVV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the nonrotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUCGCCGUGCC

Length

11 nucleotides

Bulged bases

8VVV|1|9|G|385

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVV_080 not in the Motif Atlas

Geometric match to HL_8GLP_091

Geometric discrepancy: 0.1587

The information below is about HL_8GLP_091

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50525.1

Basepair signature

cWW-cWW-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

8VVV|1|9|G|377
8VVV|1|9|U|378
8VVV|1|9|C|379
8VVV|1|9|G|380
8VVV|1|9|C|381
8VVV|1|9|C|382
8VVV|1|9|G|383
8VVV|1|9|U|384
8VVV|1|9|G|385
8VVV|1|9|C|386
8VVV|1|9|C|387

Current chains

Chain 9

18S rRNA

Nearby chains

Chain II

eS8

Chain LL

uS17