HL_8VVV_081

3D structure

PDB id

8VVV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the nonrotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UCAGGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVV_081 not in the Motif Atlas

Geometric match to HL_8CRE_199

Geometric discrepancy: 0.2345

The information below is about HL_8CRE_199

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

8VVV|1|9|U|416
8VVV|1|9|C|417
8VVV|1|9|A|418
8VVV|1|9|G|419
8VVV|1|9|G|420
8VVV|1|9|G|421

Current chains

Chain 9

18S rRNA

Nearby chains

Chain CC

eS1

Chain JJ

uS4

Chain LL

uS17

Chain WW

uS8

Chain XX

uS12