HL_8VVV_084

3D structure

PDB id

8VVV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the nonrotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGACCCG

Length

7 nucleotides

Bulged bases

8VVV|1|9|A|500, 8VVV|1|9|C|502, 8VVV|1|9|C|503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVV_084 not in the Motif Atlas

Geometric match to HL_8P9A_201

Geometric discrepancy: 0.3175

The information below is about HL_8P9A_201

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89167.2

Basepair signature

cWW-F-F

Number of instances in this motif group

22

Unit IDs

8VVV|1|9|C|498
8VVV|1|9|G|499
8VVV|1|9|A|500
8VVV|1|9|C|501
8VVV|1|9|C|502
8VVV|1|9|C|503
8VVV|1|9|G|504

Current chains

Chain 9

18S rRNA

Nearby chains

Chain EE

eS4

Chain YY

eS24