HL_8VVV_088

3D structure

PDB id

8VVV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the nonrotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGUUCAAAG

Length

9 nucleotides

Bulged bases

8VVV|1|9|G|821

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVV_088 not in the Motif Atlas

Geometric match to HL_8CRE_207

Geometric discrepancy: 0.1443

The information below is about HL_8CRE_207

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11974.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

17

Unit IDs

8VVV|1|9|U|820
8VVV|1|9|G|821
8VVV|1|9|U|822
8VVV|1|9|U|823
8VVV|1|9|C|824
8VVV|1|9|A|825
8VVV|1|9|A|826
8VVV|1|9|A|827
8VVV|1|9|G|828

Current chains

Chain 9

18S rRNA

Nearby chains

Chain EE

eS4

Chain JJ

uS4

Chain YY

eS24