HL_8VVV_095

3D structure

PDB id

8VVV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the nonrotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVV_095 not in the Motif Atlas

Geometric match to HL_8P9A_159

Geometric discrepancy: 0.1331

The information below is about HL_8P9A_159

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

8VVV|1|9|G|1141
8VVV|1|9|G|1142
8VVV|1|9|A|1143
8VVV|1|9|A|1144
8VVV|1|9|A|1145
8VVV|1|9|C|1146

Current chains

Chain 9

18S rRNA

Nearby chains

Chain CC

eS1

Chain WW

uS8

Chain aa

eS26