HL_8VVV_100

3D structure

PDB id

8VVV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the nonrotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUUAAUUC

Length

8 nucleotides

Bulged bases

8VVV|1|9|U|1371

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVV_100 not in the Motif Atlas

Geometric match to HL_8CRE_219

Geometric discrepancy: 0.1144

The information below is about HL_8CRE_219

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_63894.2

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

19

Unit IDs

8VVV|1|9|G|1366
8VVV|1|9|U|1367
8VVV|1|9|U|1368
8VVV|1|9|A|1369
8VVV|1|9|A|1370
8VVV|1|9|U|1371
8VVV|1|9|U|1372
8VVV|1|9|C|1373

Current chains

Chain 9

18S rRNA

Nearby chains

Chain RR

eS17