HL_8VVV_103

3D structure

PDB id

8VVV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the nonrotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGGCAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVV_103 not in the Motif Atlas

Geometric match to HL_7A0S_068

Geometric discrepancy: 0.1755

The information below is about HL_7A0S_068

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

8VVV|1|9|C|1565
8VVV|1|9|G|1566
8VVV|1|9|G|1567
8VVV|1|9|C|1568
8VVV|1|9|A|1569
8VVV|1|9|G|1570

Current chains

Chain 9

18S rRNA

Nearby chains

Chain PP

uS19

Chain SS

uS13

Chain TT

eS19