HL_8VVV_104

3D structure

PDB id

8VVV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the nonrotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AUUGCAAUUAUU

Length

12 nucleotides

Bulged bases

8VVV|1|9|U|1621, 8VVV|1|9|U|1622, 8VVV|1|9|A|1623

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VVV|1|9|A|1614
8VVV|1|9|U|1615
8VVV|1|9|U|1616
8VVV|1|9|G|1617
8VVV|1|9|C|1618
8VVV|1|9|A|1619
8VVV|1|9|A|1620
8VVV|1|9|U|1621
8VVV|1|9|U|1622
8VVV|1|9|A|1623
8VVV|1|9|U|1624
8VVV|1|9|U|1625

Current chains

Chain 9

18S rRNA

Nearby chains

Chain PP

uS19

Chain SS

uS13

Chain TT

eS19

Chain dd

uS14