HL_8VWQ_014

3D structure

PDB id

8VWQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified Lys-tRNAPro(GGG) in the P/P conformation on a slippery CCC-C codon and Elongation Factor P bound (uL1 in the closed conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGGCGAG

Length

7 nucleotides

Bulged bases

8VWQ|1|1|C|490

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VWQ_014 not in the Motif Atlas

Geometric match to HL_5J7L_148

Geometric discrepancy: 0.0626

The information below is about HL_5J7L_148

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

8VWQ|1|1|C|487
8VWQ|1|1|G|488
8VWQ|1|1|G|489
8VWQ|1|1|C|490
8VWQ|1|1|G|491
8VWQ|1|1|A|492
8VWQ|1|1|G|493

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain S

50S ribosomal protein L22