HL_8VWQ_030
3D structure
- PDB id
- 8VWQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome with unmodified Lys-tRNAPro(GGG) in the P/P conformation on a slippery CCC-C codon and Elongation Factor P bound (uL1 in the closed conformation)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GUGAAAAGC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8VWQ_030 not in the Motif Atlas
- Geometric match to HL_5J7L_165
- Geometric discrepancy: 0.109
- The information below is about HL_5J7L_165
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_28252.9
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 141
Unit IDs
8VWQ|1|1|G|1281
8VWQ|1|1|U|1282
8VWQ|1|1|G|1283
8VWQ|1|1|A|1284
8VWQ|1|1|A|1285
8VWQ|1|1|A|1286
8VWQ|1|1|A|1287
8VWQ|1|1|G|1288
8VWQ|1|1|C|1289
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain N
- Large ribosomal subunit protein bL17
- Chain S
- 50S ribosomal protein L22
- Chain b
- 50S ribosomal protein L32
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