HL_8VWQ_072

3D structure

PDB id

8VWQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified Lys-tRNAPro(GGG) in the P/P conformation on a slippery CCC-C codon and Elongation Factor P bound (uL1 in the closed conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGUAACGGC

Length

9 nucleotides

Bulged bases

8VWQ|1|2|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VWQ_072 not in the Motif Atlas

Geometric match to HL_5J7L_006

Geometric discrepancy: 0.09

The information below is about HL_5J7L_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

8VWQ|1|2|G|259
8VWQ|1|2|G|260
8VWQ|1|2|U|261
8VWQ|1|2|A|262
8VWQ|1|2|A|263
8VWQ|1|2|C|264
8VWQ|1|2|G|265
8VWQ|1|2|G|266
8VWQ|1|2|C|267

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain v

Small ribosomal subunit protein uS17

Chain y

30S ribosomal protein S20