HL_8VWQ_074

3D structure

PDB id

8VWQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified Lys-tRNAPro(GGG) in the P/P conformation on a slippery CCC-C codon and Elongation Factor P bound (uL1 in the closed conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VWQ_074 not in the Motif Atlas

Geometric match to HL_5J7L_008

Geometric discrepancy: 0.0854

The information below is about HL_5J7L_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

8VWQ|1|2|A|320
8VWQ|1|2|A|321
8VWQ|1|2|C|322
8VWQ|1|2|U|323
8VWQ|1|2|G|324
8VWQ|1|2|A|325
8VWQ|1|2|G|326
8VWQ|1|2|A|327
8VWQ|1|2|C|328
8VWQ|1|2|A|329
8VWQ|1|2|C|330
8VWQ|1|2|G|331
8VWQ|1|2|G|332
8VWQ|1|2|U|333

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain u

30S ribosomal protein S16

Chain y

30S ribosomal protein S20