HL_8W2N_009

3D structure

PDB id

8W2N (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified Lys-tRNAPro(GGG) in the P/P conformation on a slippery CCC-C codon and Elongation Factor P bound (uL1 in the open conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

8W2N|1|1|A|311

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8W2N_009 not in the Motif Atlas

Geometric match to HL_7A0S_010

Geometric discrepancy: 0.1296

The information below is about HL_7A0S_010

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_13999.2

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

22

Unit IDs

8W2N|1|1|C|305
8W2N|1|1|U|306
8W2N|1|1|G|307
8W2N|1|1|G|308
8W2N|1|1|A|309
8W2N|1|1|A|310
8W2N|1|1|A|311
8W2N|1|1|G|312

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain U

50S ribosomal protein L24