HL_8W2N_010

3D structure

PDB id

8W2N (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified Lys-tRNAPro(GGG) in the P/P conformation on a slippery CCC-C codon and Elongation Factor P bound (uL1 in the open conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUGACAGCC

Length

9 nucleotides

Bulged bases

8W2N|1|1|G|329, 8W2N|1|1|A|330, 8W2N|1|1|C|331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8W2N_010 not in the Motif Atlas

Geometric match to HL_5J7L_144

Geometric discrepancy: 0.0832

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

8W2N|1|1|G|327
8W2N|1|1|U|328
8W2N|1|1|G|329
8W2N|1|1|A|330
8W2N|1|1|C|331
8W2N|1|1|A|332
8W2N|1|1|G|333
8W2N|1|1|C|334
8W2N|1|1|C|335

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L4

Chain U

50S ribosomal protein L24