HL_8W2N_074

3D structure

PDB id

8W2N (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified Lys-tRNAPro(GGG) in the P/P conformation on a slippery CCC-C codon and Elongation Factor P bound (uL1 in the open conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8W2N_074 not in the Motif Atlas

Geometric match to HL_5J7L_008

Geometric discrepancy: 0.0863

The information below is about HL_5J7L_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

8W2N|1|2|A|320
8W2N|1|2|A|321
8W2N|1|2|C|322
8W2N|1|2|U|323
8W2N|1|2|G|324
8W2N|1|2|A|325
8W2N|1|2|G|326
8W2N|1|2|A|327
8W2N|1|2|C|328
8W2N|1|2|A|329
8W2N|1|2|C|330
8W2N|1|2|G|331
8W2N|1|2|G|332
8W2N|1|2|U|333

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain u

30S ribosomal protein S16

Chain y

30S ribosomal protein S20