HL_8W2N_103
3D structure
- PDB id
- 8W2N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome with unmodified Lys-tRNAPro(GGG) in the P/P conformation on a slippery CCC-C codon and Elongation Factor P bound (uL1 in the open conformation)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GUUCAAAUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8W2N_103 not in the Motif Atlas
- Geometric match to HL_4WT8_217
- Geometric discrepancy: 0.1184
- The information below is about HL_4WT8_217
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.2
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 135
Unit IDs
8W2N|1|5|G|53
8W2N|1|5|U|54
8W2N|1|5|U|55
8W2N|1|5|C|56
8W2N|1|5|A|57
8W2N|1|5|A|58
8W2N|1|5|A|59
8W2N|1|5|U|60
8W2N|1|5|C|61
Current chains
- Chain 5
- tRNA^ProL (GGG)
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain E
- 50S ribosomal protein L5
- Chain M
- 50S ribosomal protein L16
Coloring options: