HL_8W51_011

3D structure

PDB id

8W51 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of YchF(H114A) on E.coli 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GUGACAGCC

Length

9 nucleotides

Bulged bases

8W51|1|A|G|329, 8W51|1|A|A|330, 8W51|1|A|C|331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8W51_011 not in the Motif Atlas

Homologous match to HL_8VTW_011

Geometric discrepancy: 0.0875

The information below is about HL_8VTW_011

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_08002.12

Basepair signature

cWW-cWW-F-tWH

Number of instances in this motif group

16

Unit IDs

8W51|1|A|G|327
8W51|1|A|U|328
8W51|1|A|G|329
8W51|1|A|A|330
8W51|1|A|C|331
8W51|1|A|A|332
8W51|1|A|G|333
8W51|1|A|C|334
8W51|1|A|C|335

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain V

50S ribosomal protein L24