HL_8W51_016

3D structure

PDB id

8W51 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of YchF(H114A) on E.coli 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CUUAGG

Length

6 nucleotides

Bulged bases

8W51|1|A|U|546

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8W51_016 not in the Motif Atlas

Homologous match to HL_8VTW_016

Geometric discrepancy: 0.4724

The information below is about HL_8VTW_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_76539.6

Basepair signature

cWW-F

Number of instances in this motif group

20

Unit IDs

8W51|1|A|C|544
8W51|1|A|U|545
8W51|1|A|U|546
8W51|1|A|A|547
8W51|1|A|G|548
8W51|1|A|G|549

Current chains

Chain A

23S rRNA

Nearby chains

Chain S

50S ribosomal protein L21