HL_8W51_040

3D structure

PDB id

8W51 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of YchF(H114A) on E.coli 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

8W51|1|A|A|1614, 8W51|1|A|A|1616, 8W51|1|A|A|1618

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8W51_040 not in the Motif Atlas

Homologous match to HL_8VTW_039

Geometric discrepancy: 0.0944

The information below is about HL_8VTW_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56817.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

8

Unit IDs

8W51|1|A|C|1612
8W51|1|A|G|1613
8W51|1|A|A|1614
8W51|1|A|C|1615
8W51|1|A|A|1616
8W51|1|A|C|1617
8W51|1|A|A|1618
8W51|1|A|G|1619

Current chains

Chain A

23S rRNA

Nearby chains

Chain 3

50S ribosomal protein L34

Chain T

50S ribosomal protein L22