HL_8W51_054

3D structure

PDB id

8W51 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of YchF(H114A) on E.coli 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CUAAAGAGUAACG

Length

13 nucleotides

Bulged bases

8W51|1|A|A|2268, 8W51|1|A|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8W51_054 not in the Motif Atlas

Homologous match to HL_8VTW_053

Geometric discrepancy: 0.0686

The information below is about HL_8VTW_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.9

Basepair signature

cWW-tHH-cWW-tHS-F-F-tWW

Number of instances in this motif group

8

Unit IDs

8W51|1|A|C|2264
8W51|1|A|U|2265
8W51|1|A|A|2266
8W51|1|A|A|2267
8W51|1|A|A|2268
8W51|1|A|G|2269
8W51|1|A|A|2270
8W51|1|A|G|2271
8W51|1|A|U|2272
8W51|1|A|A|2273
8W51|1|A|A|2274
8W51|1|A|C|2275
8W51|1|A|G|2276

Current chains

Chain A

23S rRNA

Nearby chains

Chain N

50S ribosomal protein L16

Chain X

50S ribosomal protein L27