HL_8W51_055

3D structure

PDB id

8W51 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of YchF(H114A) on E.coli 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GGUCGGACAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8W51_055 not in the Motif Atlas

Homologous match to HL_8VTW_054

Geometric discrepancy: 0.1623

The information below is about HL_8VTW_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11805.4

Basepair signature

cWW-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

8W51|1|A|G|2303
8W51|1|A|G|2304
8W51|1|A|U|2305
8W51|1|A|C|2306
8W51|1|A|G|2307
8W51|1|A|G|2308
8W51|1|A|A|2309
8W51|1|A|C|2310
8W51|1|A|A|2311
8W51|1|A|U|2312
8W51|1|A|C|2313

Current chains

Chain A

23S rRNA

Nearby chains

Chain B

5S ribosomal RNA; 5S rRNA

Chain F

50S ribosomal protein L5