HL_8WHX_004

3D structure

PDB id

8WHX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 70S ribosome and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

AGUGAUGU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8WHX_004 not in the Motif Atlas

Homologous match to HL_4WF9_004

Geometric discrepancy: 0.195

The information below is about HL_4WF9_004

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

8WHX|1|A|A|134
8WHX|1|A|G|135
8WHX|1|A|U|136
8WHX|1|A|G|137
8WHX|1|A|A|138
8WHX|1|A|U|139
8WHX|1|A|G|140
8WHX|1|A|U|141

Current chains

Chain A

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L29

Chain W

50S ribosomal protein L23