HL_8WHX_045

3D structure

PDB id

8WHX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 70S ribosome and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

8WHX|1|A|U|1911

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8WHX_045 not in the Motif Atlas

Homologous match to HL_7RQB_042

Geometric discrepancy: 0.0916

The information below is about HL_7RQB_042

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_03562.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

56

Unit IDs

8WHX|1|A|C|1909
8WHX|1|A|U|1910
8WHX|1|A|U|1911
8WHX|1|A|C|1912
8WHX|1|A|G|1913
8WHX|1|A|G|1914

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L2

Chain a

Small subunit ribosomal RNA; SSU rRNA

Chain v

30S ribosomal protein S22