HL_8WHX_052

3D structure

PDB id

8WHX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 70S ribosome and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

8WHX|1|A|U|2179

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8WHX_052 not in the Motif Atlas

Homologous match to HL_5J7L_182

Geometric discrepancy: 0.0662

The information below is about HL_5J7L_182

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20167.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

8WHX|1|A|G|2173
8WHX|1|A|G|2174
8WHX|1|A|U|2175
8WHX|1|A|A|2176
8WHX|1|A|A|2177
8WHX|1|A|G|2178
8WHX|1|A|U|2179
8WHX|1|A|U|2180
8WHX|1|A|C|2181

Current chains

Chain A

23S rRNA

Nearby chains

Chain N

50S ribosomal protein L14

Chain a

Small subunit ribosomal RNA; SSU rRNA