HL_8WHX_057

3D structure

PDB id

8WHX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 70S ribosome and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CUAAAAUGUAACG

Length

13 nucleotides

Bulged bases

8WHX|1|A|A|2492, 8WHX|1|A|C|2499

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8WHX_057 not in the Motif Atlas

Homologous match to HL_5J7L_187

Geometric discrepancy: 0.094

The information below is about HL_5J7L_187

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91939.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

8

Unit IDs

8WHX|1|A|C|2488
8WHX|1|A|U|2489
8WHX|1|A|A|2490
8WHX|1|A|A|2491
8WHX|1|A|A|2492
8WHX|1|A|A|2493
8WHX|1|A|U|2494
8WHX|1|A|G|2495
8WHX|1|A|U|2496
8WHX|1|A|A|2497
8WHX|1|A|A|2498
8WHX|1|A|C|2499
8WHX|1|A|G|2500

Current chains

Chain A

23S rRNA

Nearby chains

Chain Z

50S ribosomal protein L27