HL_8WHX_067

3D structure

PDB id

8WHX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 70S ribosome and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

8WHX|1|A|A|2884

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8WHX_067 not in the Motif Atlas

Geometric match to HL_5J7L_179

Geometric discrepancy: 0.1628

The information below is about HL_5J7L_179

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_04783.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

9

Unit IDs

8WHX|1|A|C|2882
8WHX|1|A|G|2883
8WHX|1|A|A|2884
8WHX|1|A|G|2885
8WHX|1|A|A|2886
8WHX|1|A|G|2887

Current chains

Chain A

23S rRNA

Nearby chains

Chain I

50S ribosomal protein L6