HL_8WHX_108

3D structure

PDB id

8WHX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 70S ribosome and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UUUCGG

Length

6 nucleotides

Bulged bases

8WHX|1|a|C|85

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8WHX_108 not in the Motif Atlas

Geometric match to HL_2CZJ_007

Geometric discrepancy: 0.3326

The information below is about HL_2CZJ_007

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_23696.2

Basepair signature

cWW-F-F

Number of instances in this motif group

8

Unit IDs

8WHX|1|a|U|82
8WHX|1|a|U|83
8WHX|1|a|U|84
8WHX|1|a|C|85
8WHX|1|a|G|86
8WHX|1|a|G|87

Current chains

Chain a

16S rRNA

Nearby chains