HL_8WHY_010

3D structure

PDB id

8WHY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 50S ribosomal subunit (body 1) of 70S ribosome and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UCUACCUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8WHY_010 not in the Motif Atlas

Geometric match to HL_2JLT_002

Geometric discrepancy: 0.3017

The information below is about HL_2JLT_002

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_52651.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

29

Unit IDs

8WHY|1|A|U|337
8WHY|1|A|C|338
8WHY|1|A|U|339
8WHY|1|A|A|340
8WHY|1|A|C|341
8WHY|1|A|C|342
8WHY|1|A|U|343
8WHY|1|A|G|344

Current chains

Chain A

23S rRNA

Nearby chains