RNA 3D Hub //

8WHY Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_8WHY_0011/A/56:65No text annotation
homologous
HL_5J7L_134
NA
HL_8WHY_0021/A/84:93Pseudoknot geometry
homologous
HL_4WF9_002
HL_00911.2
HL_8WHY_0031/A/120:125No text annotation
homologous
HL_7RQB_003
NA
HL_8WHY_0041/A/134:141GNRA wlth tandem sheared
homologous
HL_4WF9_004
HL_98423.3
HL_8WHY_0051/A/157:167No text annotation
homologous
HL_5J7L_138
NA
HL_8WHY_0061/A/193:200No text annotation
geometric
HL_4WF9_006
HL_48677.1
HL_8WHY_0071/A/224:230No text annotation
homologous
HL_5J7L_140
NA
HL_8WHY_0081/A/246:252No text annotation
homologous
HL_4WF9_008
HL_76371.2
HL_8WHY_0091/A/283:303No text annotation
HL_8WHY_0101/A/337:344Pseudoknot geometry
geometric
HL_2JLT_002
HL_52651.2
HL_8WHY_0111/A/387:394T-loop with 2 stacked bulged bases
homologous
HL_5J7L_142
NA
HL_8WHY_0121/A/401:405No text annotation
homologous
HL_7RQB_011
NA
HL_8WHY_0131/A/409:417T-loop with unstacked turn
homologous
HL_5J7L_144
NA
HL_8WHY_0141/A/469:481No text annotation
homologous
HL_4WF9_013
HL_69139.1
HL_8WHY_0151/A/498:505Pseudoknot geometry
homologous
HL_7A0S_014
HL_30680.5
HL_8WHY_0161/A/550:555GNRA
homologous
HL_7RQB_015
NA
HL_8WHY_0171/A/575:580GNRA
homologous
HL_7RQB_016
NA
HL_8WHY_0181/A/634:637No text annotation
HL_8WHY_0191/A/658:667T-loop with 2 bulged bases not stacked
geometric
HL_3F2X_004
HL_13999.3
HL_8WHY_0201/A/705:710No text annotation
geometric
HL_4V9F_003
HL_75660.8
HL_8WHY_0211/A/723:728GNRA
homologous
HL_7RQB_020
NA
HL_8WHY_0221/A/735:741No text annotation
homologous
HL_7RQB_021
NA
HL_8WHY_0231/A/755:760No text annotation
geometric
HL_2Y9H_003
HL_75660.8
HL_8WHY_0241/A/827:834No text annotation
homologous
HL_7RQB_022
NA
HL_8WHY_0251/A/859:868No text annotation
homologous
HL_8VTW_022
NA
HL_8WHY_0261/A/894:900No text annotation
homologous
HL_7RQB_024
NA
HL_8WHY_0271/A/941:946No text annotation
homologous
HL_5J7L_157
NA
HL_8WHY_0291/A/1072:1079GNRA
homologous
HL_4WF9_027
HL_34789.4
HL_8WHY_0301/A/1096:1103No text annotation
homologous
HL_4WF9_028
HL_47171.1
HL_8WHY_0321/A/1290:1293No text annotation
geometric
HL_1WZ2_007
HL_75660.8
HL_8WHY_0331/A/1336:1341GNRA
homologous
HL_4WF9_031
HL_34789.4
HL_8WHY_0341/A/1396:1404T-loop with 2 stacked bulged bases
homologous
HL_4WF9_032
HL_33597.3
HL_8WHY_0351/A/1439:1445Pseudoknot geometry with 3' bulge
homologous
HL_7A0S_033
HL_49081.1
HL_8WHY_0361/A/1478:1483GNRA
homologous
HL_7RQB_035
NA
HL_8WHY_0371/A/1504:1513No text annotation
homologous
HL_7RQB_036
NA
HL_8WHY_0391/A/1671:1682Pseudoknot
homologous
HL_7A0S_036
HL_00824.1
HL_8WHY_0401/A/1712:1718Pseudoknot geometry with 3' bulge
homologous
HL_5J7L_170
NA
HL_8WHY_0411/A/1753:1760No text annotation
geometric
HL_5TBW_015
NA
HL_8WHY_0421/A/1785:1788Mini UNCG
homologous
HL_5J7L_172
NA
HL_8WHY_0431/A/1830:1837No text annotation
homologous
HL_7RQB_040
NA
HL_8WHY_0441/A/1848:1854GNRA
homologous
HL_5J7L_174
NA
HL_8WHY_0451/A/1909:1914No text annotation
homologous
HL_7RQB_042
NA
HL_8WHY_0461/A/1945:1948No text annotation
geometric
HL_5J7L_176
NA
HL_8WHY_0471/A/1969:1973No text annotation
homologous
HL_7RQB_044
NA
HL_8WHY_0481/A/1994:2004No text annotation
homologous
HL_5J7L_178
NA
HL_8WHY_0491/A/2023:2028GNRA related
homologous
HL_5J7L_179
NA
HL_8WHY_0511/A/2134:2144No text annotation
geometric
HL_5TBW_049
NA
HL_8WHY_0521/A/2173:2181No text annotation
homologous
HL_5J7L_182
NA
HL_8WHY_0531/A/2251:2260No text annotation
homologous
HL_7A0S_049
HL_78372.1
HL_8WHY_0551/A/2432:2439No text annotation
homologous
HL_5J7L_185
NA
HL_8WHY_0561/A/2472:2480No text annotation
homologous
HL_7A0S_052
HL_11974.2
HL_8WHY_0571/A/2488:2500No text annotation
homologous
HL_5J7L_187
NA
HL_8WHY_0761/A/2528:2536No text annotation
homologous
HL_5J7L_219
NA
HL_8WHY_0591/A/2548:2555Pseudoknot geometry
homologous
HL_4WF9_052
HL_52651.2
HL_8WHY_0601/A/2579:2586GNRA with extra cWW
homologous
HL_4WF9_053
HL_87268.2
HL_8WHY_0611/A/2598:2603GNRA
homologous
HL_7RQB_058
NA
HL_8WHY_0621/A/2628:2637No text annotation
homologous
HL_5J7L_192
NA
HL_8WHY_0641/A/2752:2759No text annotation
homologous
HL_7RQB_061
NA
HL_8WHY_0651/A/2775:2781No text annotation
homologous
HL_4WF9_058
HL_48677.1
HL_8WHY_0661/A/2818:2823GNRA
homologous
HL_5J7L_196
NA
HL_8WHY_0681/A/2925:2930Ribsomal LSU H95
homologous
HL_7A0S_064
HL_12125.2
HL_8WHY_0691/A/2969:2983No text annotation
homologous
HL_7RQB_066
NA
HL_8WHY_0711/A/3040:3048No text annotation
homologous
HL_5J7L_201
NA
HL_8WHY_0721/A/3077:3082GNRA
homologous
HL_7A0S_068
HL_34789.4
HL_8WHY_0751/B/35:49No text annotation
homologous
HL_8C3A_228
NA
HL_8WHY_0731/B/39:45No text annotation
geometric
HL_5J7L_203
NA
HL_8WHY_0741/B/85:90No text annotation
geometric
HL_5U3G_001
HL_75660.8

Problematic loops

#loop idProblemSequence
HL_8WHY_028Externally structured
HL_8WHY_031Externally structured
HL_8WHY_038No text annotation
HL_8WHY_050No text annotation
HL_8WHY_054UNCG
HL_8WHY_058No text annotation
HL_8WHY_063No text annotation
HL_8WHY_067GNRA
HL_8WHY_070No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_8WHY_0011/A/21:27,
1/A/597:603		Triple sheared with non-canonical cWW
homologous
IL_4WF9_001
IL_22311.1
IL_8WHY_0021/A/33:34,
1/A/530:532		Single bulged A
homologous
IL_7RQB_002
NA
IL_8WHY_0031/A/40:41,
1/A/522:524		Minor groove platform
homologous
IL_7A0S_003
IL_34520.3
IL_8WHY_0041/A/78:82,
1/A/95:102		Kink-turn
homologous
IL_7RQB_004
NA
IL_8WHY_0051/A/182:183,
1/A/211:213		Single stack bend
homologous
IL_4WF9_007
IL_15011.3
IL_8WHY_0061/A/187:193,
1/A/200:207		8x7 Sarcin-Ricin; G-bulge
geometric
IL_4V9F_006
IL_62167.3
IL_8WHY_0071/A/239:245,
1/A/253:258		7x6 Sarcin-Ricin; G-bulge
homologous
IL_7RQB_007
NA
IL_8WHY_0081/A/322:323,
1/A/452:454		Single stack bend
geometric
IL_5J7L_249
NA
IL_8WHY_1291/A/322:325,
1/A/450:454		No text annotation
IL_8WHY_0091/A/323:325,
1/A/450:452		No text annotation
homologous
IL_4WF9_013
NA
IL_8WHY_0101/A/356:364,
1/A/438:439		No text annotation
IL_8WHY_0111/A/369:371,
1/A/432:433		Single bulged U
geometric
IL_4V9F_107
IL_97561.5
IL_8WHY_0121/A/374:376,
1/A/425:429		No text annotation
homologous
IL_5J7L_254
NA
IL_8WHY_0131/A/382:384,
1/A/397:398		Single bulged U
geometric
IL_3TZR_002
IL_97561.5
IL_8WHY_0141/A/569:572,
1/A/583:596		No text annotation
homologous
IL_4WF9_015
IL_44923.1
IL_8WHY_0151/A/623:626,
1/A/646:649		Double sheared
homologous
IL_5J7L_256
NA
IL_8WHY_0161/A/630:631,
1/A/640:642		Single bulged U
geometric
IL_1S03_005
IL_97561.5
IL_8WHY_0171/A/656:658,
1/A/667:669		Isolated non-canonical cWW pair
homologous
IL_4WF9_017
IL_71625.3
IL_8WHY_0181/A/683:685,
1/A/780:781		Single bulged A
homologous
IL_7A0S_012
IL_14190.2
IL_8WHY_0191/A/699:703,
1/A/712:716		AAA cross-strand stack
homologous
IL_7A0S_013
IL_66798.3
IL_8WHY_0201/A/787:789,
1/A/921:923		Isolated non-canonical cWW pair
geometric
IL_3GM7_002
IL_01003.4
IL_8WHY_0211/A/789:793,
1/A/914:921		tHW-tHW cross-strand stack
homologous
IL_7RQB_018
NA
IL_8WHY_0221/A/812:813,
1/A/878:880		Single bulged A
geometric
IL_5J7L_261
NA
IL_8WHY_0231/A/817:818,
1/A/843:845		Single bulged G
geometric
IL_5J7L_262
NA
IL_8WHY_0241/A/818:822,
1/A/839:843		Triple sheared
homologous
IL_7RQB_021
NA
IL_8WHY_0251/A/853:855,
1/A/872:873		Major groove platform
homologous
IL_4WF9_026
IL_48076.8
IL_8WHY_0261/A/890:892,
1/A/902:906		Multiple bulged bases
geometric
IL_5J7L_265
NA
IL_8WHY_0271/A/952:953,
1/A/1057:1059		Single stack bend
homologous
IL_7A0S_022
IL_15011.3
IL_8WHY_0281/A/959:961,
1/A/1048:1051		Isolated near basepair
geometric
IL_4V88_406
NA
IL_8WHY_1301/A/959:964,
1/A/1043:1051		No text annotation
IL_8WHY_0291/A/961:964,
1/A/1043:1048		No text annotation
IL_8WHY_0301/A/971:977,
1/A/1030:1036		7x7 Sarcin-Ricin with intercalated A; G-bulge
homologous
IL_5J7L_270
NA
IL_8WHY_0311/A/977:978,
1/A/1028:1030		Minor groove platform
geometric
IL_4V9F_034
IL_34520.3
IL_8WHY_0321/A/979:984,
1/A/1024:1027		C-loop
homologous
IL_7RQB_029
NA
IL_8WHY_0331/A/986:988,
1/A/1020:1022		Isolated cWS basepair
homologous
IL_4WF9_034
NA
IL_8WHY_0371/A/1066:1067,
1/A/1084:1086		Single bulged G
geometric
IL_4LVW_002
IL_28408.2
IL_8WHY_0381/A/1112:1114,
1/A/1278:1279		Single bulged C
homologous
IL_5J7L_276
NA
IL_8WHY_0391/A/1116:1120,
1/A/1272:1276		UAA/GAN
homologous
IL_4WF9_036
IL_08938.1
IL_8WHY_0401/A/1122:1129,
1/A/1269:1270		SSU/LSU pseudoknot
geometric
IL_7RQB_037
NA
IL_8WHY_0411/A/1129:1131,
1/A/1268:1269		Single bulged U
homologous
IL_4WF9_038
IL_97561.5
IL_8WHY_0421/A/1136:1142,
1/A/1258:1263		Kink-turn related
geometric
IL_4V9F_040
IL_57188.6
IL_8WHY_0431/A/1142:1148,
1/A/1242:1258		No text annotation
geometric
IL_5J7L_281
NA
IL_8WHY_0441/A/1149:1152,
1/A/1239:1241		Isolated non-canonical cWW pair
homologous
IL_7A0S_038
IL_76400.1
IL_8WHY_0451/A/1161:1169,
1/A/1226:1230		Kink-turn
homologous
IL_5J7L_284
NA
IL_8WHY_0461/A/1311:1313,
1/A/1362:1365		Isolated cWS basepair
homologous
IL_4WF9_044
IL_42997.5
IL_8WHY_0471/A/1322:1329,
1/A/1349:1353		Kink-turn
homologous
IL_5J7L_288
NA
IL_8WHY_0481/A/1333:1334,
1/A/1343:1345		Single bulged A
geometric
IL_2VPL_002
IL_14190.2
IL_8WHY_0491/A/1377:1384,
1/A/2235:2241		8x7 Sarcin-Ricin; G-bulge
homologous
IL_5J7L_289
NA
IL_8WHY_0501/A/1425:1428,
1/A/1821:1822		Major groove platform; stack outside cWW
homologous
IL_7A0S_046
IL_74641.2
IL_8WHY_0511/A/1434:1438,
1/A/1446:1448		Major groove minor groove platform with tHH
homologous
IL_4WF9_050
IL_06671.1
IL_8WHY_0521/A/1466:1470,
1/A/1491:1495		UAA/GAN
homologous
IL_5J7L_292
NA
IL_8WHY_0531/A/1472:1476,
1/A/1485:1489		tSH-tHW-tHS
homologous
IL_5J7L_293
NA
IL_8WHY_0541/A/1529:1531,
1/A/1804:1806		Isolated non-canonical cWW pair
geometric
IL_4J50_002
IL_01003.4
IL_8WHY_0591/A/1638:1642,
1/A/1797:1800		Other IL
homologous
IL_4WF9_054
IL_74317.1
IL_8WHY_0601/A/1653:1656,
1/A/1777:1781		Tandem non-canonical cWW pairs
homologous
IL_5J7L_296
NA
IL_8WHY_0611/A/1658:1661,
1/A/1771:1775		tSH-tHW
homologous
IL_7RQB_057
NA
IL_8WHY_0621/A/1689:1692,
1/A/1742:1746		No text annotation
homologous
IL_5J7L_299
NA
IL_8WHY_0631/A/1694:1699,
1/A/1735:1740		5x5 Sarcin-Ricin with intercalated A; G-bulge
geometric
IL_7A0S_027
NA
IL_8WHY_0641/A/1702:1703,
1/A/1726:1732		No text annotation
homologous
IL_7RQB_061
NA
IL_8WHY_0651/A/1709:1711,
1/A/1719:1720		Multiple bulged bases
geometric
IL_4V9F_021
IL_71421.3
IL_8WHY_0661/A/1869:1874,
1/A/2228:2230		No text annotation
IL_8WHY_0671/A/1881:1883,
1/A/2219:2221		Isolated tWW turn
homologous
IL_7A0S_060
IL_10432.1
IL_8WHY_0681/A/1884:1887,
1/A/2217:2218		Major groove platform; stack outside cWW
geometric
IL_5J7L_306
NA
IL_8WHY_1331/A/1884:1892,
1/A/2214:2218		No text annotation
homologous
IL_4WF9_117
IL_80252.1
IL_8WHY_0691/A/1887:1892,
1/A/2214:2217		Intercalated tWH
homologous
IL_4WF9_065
IL_28217.1
IL_8WHY_0701/A/1904:1909,
1/A/1914:1920		tSH-tSH-tHH-tHS
geometric
IL_5TBW_078
NA
IL_8WHY_0711/A/1930:1934,
1/A/1960:1963		Tandem non-canonical cWW pairs
geometric
IL_5J7L_296
NA
IL_8WHY_0721/A/1937:1942,
1/A/1952:1957		No text annotation
geometric
IL_8ZA4_001
NA
IL_8WHY_0731/A/1944:1945,
1/A/1948:1950		Single bulged C
geometric
IL_5J7L_311
NA
IL_8WHY_0741/A/1987:1988,
1/A/2204:2206		Single bulged A
homologous
IL_7RQB_069
NA
IL_8WHY_0751/A/2015:2021,
1/A/2030:2038		Kink-turn related
homologous
IL_7RQB_070
NA
IL_8WHY_0761/A/2054:2057,
1/A/2126:2127		Minor groove platform, major groove intercalation
homologous
IL_5J7L_314
NA
IL_8WHY_0771/A/2058:2059,
1/A/2122:2125		Major groove intercalation
homologous
IL_5J7L_315
NA
IL_8WHY_0781/A/2063:2066,
1/A/2117:2118		Major groove minor groove platform; mini C-loop
homologous
IL_5J7L_316
NA
IL_8WHY_0791/A/2068:2072,
1/A/2111:2115		UAA/GAN with extra stack
homologous
IL_7RQB_074
NA
IL_8WHY_0801/A/2073:2078,
1/A/2105:2110		No text annotation
geometric
IL_5TBW_026
NA
IL_8WHY_0811/A/2081:2084,
1/A/2098:2102		UAA/GAN related
homologous
IL_5J7L_317
NA
IL_8WHY_0821/A/2157:2158,
1/A/2188:2191		Bulged stacked bases
geometric
IL_5J7L_318
NA
IL_8WHY_0831/A/2158:2169,
1/A/2185:2188		No text annotation
homologous
IL_7A0S_072
IL_04332.3
IL_8WHY_0841/A/2274:2276,
1/A/2841:2842		Major groove platform
homologous
IL_7RQB_078
NA
IL_8WHY_0851/A/2278:2280,
1/A/2836:2839		No text annotation
homologous
IL_4WF9_079
IL_80025.1
IL_8WHY_0861/A/2293:2294,
1/A/2662:2665		Minor groove platform
homologous
IL_7A0S_076
IL_34520.3
IL_8WHY_0871/A/2304:2306,
1/A/2460:2463		Isolated tHS basepair with bulges
homologous
IL_7RQB_082
NA
IL_8WHY_0881/A/2308:2310,
1/A/2456:2458		Isolated non-canonical cWW pair
homologous
IL_5J7L_326
NA
IL_8WHY_0891/A/2317:2319,
1/A/2416:2418		Isolated non-canonical cWW pair
geometric
IL_7A0S_020
IL_01003.4
IL_8WHY_0981/A/2425:2427,
1/A/2444:2445		Single bulged U
homologous
IL_5J7L_331
NA
IL_8WHY_0991/A/2521:2523,
1/A/2541:2545		Isolated tHS basepair with bulges
geometric
IL_7RQB_088
NA
IL_8WHY_1001/A/2574:2577,
1/A/2588:2591		Double sheared
homologous
IL_7RQB_089
NA
IL_8WHY_1011/A/2625:2627,
1/A/2638:2639		Single bulged U
homologous
IL_4WF9_088
IL_97561.5
IL_8WHY_1361/A/2683:2687,
1/A/2711:2717		No text annotation
IL_8WHY_1061/A/2685:2687,
1/A/2711:2713		Isolated non-canonical cWW pair
geometric
IL_1YZ9_001
NA
IL_8WHY_1071/A/2690:2694,
1/A/2704:2708		Double sheared with non-canonical cWW
homologous
IL_4WF9_093
IL_87767.2
IL_8WHY_1081/A/2731:2732,
1/A/2804:2806		Major groove platform
homologous
IL_4WF9_094
IL_46637.2
IL_8WHY_1091/A/2734:2736,
1/A/2798:2802		Isolated non-canonical cWW with bulges
geometric
IL_5J7L_340
NA
IL_8WHY_1101/A/2736:2737,
1/A/2795:2798		No text annotation
homologous
IL_5J7L_341
NA
IL_8WHY_1111/A/2746:2747,
1/A/2764:2767		Major groove platform with intercalation
homologous
IL_7A0S_091
IL_94991.2
IL_8WHY_1131/A/2815:2816,
1/A/2825:2827		Single bulged A
homologous
IL_5J7L_344
NA
IL_8WHY_1141/A/2860:2864,
1/A/2998:3006		tSH-tHS-tHW
homologous
IL_7RQB_102
NA
IL_8WHY_1151/A/2876:2882,
1/A/2887:2892		Sarcin-Ricin target in LSU H95; G-bulge
geometric
IL_7RQB_103
NA
IL_8WHY_1161/A/2904:2908,
1/A/2949:2951		C-loop
homologous
IL_7RQB_104
NA
IL_8WHY_1171/A/2911:2915,
1/A/2942:2946		UAA/GAN related, with intercalation
homologous
IL_4WF9_102
IL_82016.1
IL_8WHY_1181/A/2919:2920,
1/A/2935:2938		Multiple bulged bases
homologous
IL_5J7L_349
NA
IL_8WHY_1191/A/2961:2966,
1/A/2986:2991		UAA/GAN with extra cWW
homologous
IL_5J7L_350
NA
IL_8WHY_1201/A/3059:3061,
1/A/3098:3101		Isolated non-canonical cWW with bulges
geometric
IL_4V9F_097
IL_68118.4
IL_8WHY_1211/A/3064:3066,
1/A/3092:3095		Decoding loop related
homologous
IL_7A0S_100
IL_05502.1
IL_8WHY_1221/A/3068:3073,
1/A/3086:3090		tHS double platform
homologous
IL_4WF9_108
IL_48489.1
IL_8WHY_1231/B/3:5,
1/B/113:114		Single bulged A
geometric
IL_4V88_399
NA
IL_8WHY_1241/B/18:19,
1/B/66:68		Major groove intercalation
homologous
IL_4WF9_112
IL_14190.2
IL_8WHY_1251/B/24:30,
1/B/56:61		No text annotation
geometric
IL_9E6Q_106
IL_41504.1
IL_8WHY_1261/B/31:32,
1/B/52:55		Major groove minor groove platform; mini C-loop
homologous
IL_5J7L_357
NA
IL_8WHY_1271/B/35:39,
1/B/45:49		Symmetric double minor groove platform
homologous
IL_7RQB_114
NA
IL_8WHY_1281/B/72:80,
1/B/95:103		Bacterial 5S Loop E
homologous
IL_7RQB_115
NA

Problematic loops

#loop idProblemSequence
IL_8WHY_131No text annotation
IL_8WHY_034No text annotation
IL_8WHY_035No text annotation
IL_8WHY_036Tandem non-canonical cWW pairs
IL_8WHY_055No text annotation
IL_8WHY_132No text annotation
IL_8WHY_056Isolated non-canonical cWW pair
IL_8WHY_057No text annotation
IL_8WHY_058Isolated non-canonical cWW pair
IL_8WHY_090Isolated non-canonical cWW pair
IL_8WHY_091Isolated non-canonical cWW pair
IL_8WHY_092Isolated cWS basepair
IL_8WHY_134No text annotation
IL_8WHY_138No text annotation
IL_8WHY_093No text annotation
IL_8WHY_094No text annotation
IL_8WHY_095No text annotation
IL_8WHY_135Kink-turn related
IL_8WHY_096Kink-turn
IL_8WHY_097Isolated non-canonical cWW pair
IL_8WHY_102Single stack bend
IL_8WHY_103Major groove intercalation
IL_8WHY_104Major groove platform
IL_8WHY_105Major groove minor groove platform with extra cWW
IL_8WHY_112Isolated non-canonical cWW pair
IL_8WHY_137No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_8WHY_0121/A/27:28,
1/A/562:569,
1/A/596:597		No text annotation
geometric
J3_5J7L_036
NA
J3_8WHY_0131/A/27:28,
1/A/562:572,
1/A/583:597		No text annotation
homologous
J3_5J7L_066
NA
J3_8WHY_0141/A/29:32,
1/A/533:549,
1/A/556:561		No text annotation
homologous
J3_5J7L_067
NA
J3_8WHY_0151/A/53:54,
1/A/67:73,
1/A/107:111		No text annotation
homologous
J3_5J7L_037
NA
J3_8WHY_0011/A/317:319,
1/A/457:463,
1/A/487:492		No text annotation
J3_8WHY_0161/A/325:331,
1/A/350:352,
1/A/443:450		No text annotation
J3_8WHY_0171/A/378:382,
1/A/398:407,
1/A/419:423		No text annotation
homologous
J3_4WF9_015
J3_77124.1
J3_8WHY_0021/A/798:804,
1/A/888:890,
1/A/906:909		No text annotation
homologous
J3_5J7L_038
NA
J3_8WHY_0031/A/813:815,
1/A/847:851,
1/A/875:878		No text annotation
homologous
J3_7RQB_005
NA
J3_8WHY_0041/A/1413:1418,
1/A/1843:1845,
1/A/1857:1860		No text annotation
homologous
J3_5J7L_041
NA
J3_8WHY_0051/A/1421:1424,
1/A/1823:1829,
1/A/1838:1840		No text annotation
homologous
J3_7A0S_007
J3_47341.1
J3_8WHY_0181/A/1459:1465,
1/A/1496:1500,
1/A/1517:1518		No text annotation
homologous
J3_7A0S_018
J3_94309.1
J3_8WHY_0061/A/1531:1537,
1/A/1635:1637,
1/A/1801:1804		No text annotation
J3_8WHY_0191/A/1646:1650,
1/A/1784:1785,
1/A/1788:1793		No text annotation
geometric
J3_4V9F_017
J3_08594.1
J3_8WHY_0071/A/2314:2316,
1/A/2419:2423,
1/A/2447:2452		Kink-turn 3-way junction
homologous
J3_5J7L_044
NA
J3_8WHY_0201/A/2506:2508,
1/A/2608:2619,
1/A/2645:2651		No text annotation
homologous
J3_5J7L_070
NA
J3_8WHY_0081/A/2519:2521,
1/A/2545:2547,
1/A/2556:2561		No text annotation
homologous
J3_4WF9_008
J3_05327.1
J3_8WHY_0091/A/2741:2744,
1/A/2769:2771,
1/A/2785:2791		No text annotation
homologous
J3_7RQB_012
NA
J3_8WHY_0101/A/3035:3037,
1/A/3051:3057,
1/A/3103:3107		No text annotation
J3_8WHY_0111/B/11:17,
1/B/69:71,
1/B/104:107		No text annotation
J4_8WHY_0011/A/269:274,
1/A/312:317,
1/A/492:494,
1/A/509:512		No text annotation
J4_8WHY_0021/A/378:382,
1/A/398:401,
1/A/405:407,
1/A/419:423		No text annotation
homologous
J4_4WF9_002
J4_16174.1
J4_8WHY_0031/A/1385:1391,
1/A/1409:1410,
1/A/1863:1866,
1/A/2233:2234		No text annotation
homologous
J4_7A0S_004
J4_64571.6
J4_8WHY_0041/A/1425:1429,
1/A/1453:1458,
1/A/1519:1520,
1/A/1815:1822		No text annotation
homologous
J4_4WF9_005
J4_77353.1
J4_8WHY_0051/A/1428:1429,
1/A/1453:1458,
1/A/1519:1520,
1/A/1815:1821		No text annotation
homologous
J4_4WF9_006
J4_48150.1
J4_8WHY_0061/A/1664:1667,
1/A/1686:1688,
1/A/1747:1751,
1/A/1762:1768		No text annotation
J4_8WHY_0071/A/1989:1993,
1/A/2005:2009,
1/A/2044:2047,
1/A/2199:2203		No text annotation
homologous
J4_5J7L_025
NA
J4_8WHY_0081/A/2050:2052,
1/A/2129:2130,
1/A/2148:2157,
1/A/2191:2196		No text annotation
homologous
J4_9DFE_008
J4_42306.1
J4_8WHY_0091/A/2509:2513,
1/A/2567:2571,
1/A/2594:2596,
1/A/2605:2607		No text annotation
homologous
J4_9DFE_009
J4_98139.1
J4_8WHY_0101/A/2867:2870,
1/A/2898:2900,
1/A/2955:2959,
1/A/2993:2995		No text annotation
homologous
J4_4WF9_009
J4_77044.5
J5_8WHY_0011/A/44:51,
1/A/113:118,
1/A/127:128,
1/A/147:149,
1/A/175:177		No text annotation
homologous
J5_9DFE_001
J5_27223.1
J5_8WHY_0021/A/269:274,
1/A/312:319,
1/A/457:463,
1/A/487:494,
1/A/509:512		No text annotation
J5_8WHY_0031/A/618:620,
1/A/652:656,
1/A/669:671,
1/A/1376:1377,
1/A/2241:2242		No text annotation
homologous
J5_9DFE_003
J5_43153.6
J5_8WHY_0041/A/676:681,
1/A/783:786,
1/A/924:927,
1/A/1310:1311,
1/A/1365:1371		No text annotation
homologous
J5_4WF9_004
J5_74302.6
J5_8WHY_0051/A/694:697,
1/A/718:722,
1/A/729:732,
1/A/744:749,
1/A/766:771		No text annotation
J5_8WHY_0061/A/1892:1900,
1/A/1924:1925,
1/A/1968:1969,
1/A/1973:1981,
1/A/2212:2214		No text annotation
homologous
J5_5J7L_016
NA
J5_8WHY_0071/A/2281:2288,
1/A/2670:2677,
1/A/2724:2731,
1/A/2806:2812,
1/A/2830:2835		No text annotation
J5_8WHY_0081/A/2297:2300,
1/A/2467:2470,
1/A/2482:2483,
1/A/2505:2506,
1/A/2651:2659		No text annotation
homologous
J5_4WF9_007
J5_39529.2
J6_8WHY_0011/A/42:43,
1/A/178:182,
1/A/213:223,
1/A/231:235,
1/A/262:267,
1/A/514:521		No text annotation
J6_8WHY_0021/A/2297:2300,
1/A/2467:2470,
1/A/2482:2483,
1/A/2505:2508,
1/A/2608:2619,
1/A/2645:2659		No text annotation
J7_8WHY_0011/A/932:937,
1/A/950:951,
1/A/1060:1063,
1/A/1089:1094,
1/A/1105:1109,
1/A/1282:1283,
1/A/1300:1305		No text annotation
J8_8WHY_0011/A/5:12,
1/A/612:618,
1/A/2242:2247,
1/A/2264:2267,
1/A/2849:2854,
1/A/3012:3015,
1/A/3027:3032,
1/A/3110:3115		No text annotation

Problematic loops

No problematic loops


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