HL_8WHY_040

3D structure

PDB id

8WHY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 50S ribosomal subunit (body 1) of 70S ribosome and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GUAAAUC

Length

7 nucleotides

Bulged bases

8WHY|1|A|U|1713, 8WHY|1|A|U|1717

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8WHY_040 not in the Motif Atlas

Homologous match to HL_5J7L_170

Geometric discrepancy: 0.0747

The information below is about HL_5J7L_170

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_57176.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

8WHY|1|A|G|1712
8WHY|1|A|U|1713
8WHY|1|A|A|1714
8WHY|1|A|A|1715
8WHY|1|A|A|1716
8WHY|1|A|U|1717
8WHY|1|A|C|1718

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L2