HL_8WHY_043

3D structure

PDB id

8WHY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 50S ribosomal subunit (body 1) of 70S ribosome and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CAACACAG

Length

8 nucleotides

Bulged bases

8WHY|1|A|A|1832, 8WHY|1|A|A|1834, 8WHY|1|A|A|1836

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8WHY_043 not in the Motif Atlas

Homologous match to HL_7RQB_040

Geometric discrepancy: 0.0935

The information below is about HL_7RQB_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64430.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

8WHY|1|A|C|1830
8WHY|1|A|A|1831
8WHY|1|A|A|1832
8WHY|1|A|C|1833
8WHY|1|A|A|1834
8WHY|1|A|C|1835
8WHY|1|A|A|1836
8WHY|1|A|G|1837

Current chains

Chain A

23S rRNA

Nearby chains

Chain 7

50S ribosomal protein L34

Chain V

50S ribosomal protein L22